| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,051,978 | T→C | 25.5% | K123K (AAA→AAG) | sodC ← | superoxide dismutase, Cu, Zn |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,051,978 | 0 | T | C | 25.5% | 99.1 / 31.1 | 86 | K123K (AAA→AAG) | sodC | superoxide dismutase, Cu, Zn |
| Reads supporting (aligned to +/- strand): ref base T (27/37); new base C (8/14); total (35/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTAAATGCCCGGCACCTTCTGG > minE/1051918‑1052037 | cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:3421540/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:2650736/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:1911090/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:1564300/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:1496333/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:3121010/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:2531139/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:503978/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:2036149/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:796161/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:1257591/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:2062288/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:2385897/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:815599/68‑1 (MQ=255)cgcTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:2338668/68‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:465934/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:2610942/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:723576/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:1814832/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:610412/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:1725280/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:2790474/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:2761798/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:1423938/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:1052654/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:1717766/69‑1 (MQ=255) tttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:1195800/69‑1 (MQ=255) ttGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCatta > 1:655789/1‑69 (MQ=255) ttGTCTTTGACTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:2859549/68‑1 (MQ=255) aGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGt < 1:511459/46‑1 (MQ=255) tGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTgcaggcag < 1:78885/69‑1 (MQ=255) tGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTgcaggcag < 1:879414/69‑1 (MQ=255) tGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTgcaggcag < 1:1710060/69‑1 (MQ=255) tGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTgcaggcag < 1:1213350/69‑1 (MQ=255) tGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTgcaggcag < 1:2018190/69‑1 (MQ=255) aTTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGAt < 1:1825047/69‑1 (MQ=255) aTTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGAt < 1:1807332/69‑1 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTg > 1:1606623/1‑35 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:3371443/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:2476357/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:2601056/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:2712116/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:2708189/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:3057257/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:2256628/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:795795/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:1663197/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:1705076/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:535955/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:1865927/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:1960221/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:204182/1‑49 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTga > 1:2062642/1‑48 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTgca > 1:1959020/1‑59 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTgca > 1:1404001/1‑59 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTgca > 1:915776/1‑59 (MQ=255) tCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTgca > 1:3085868/1‑59 (MQ=255) tCAGACGAGGCGCCATGACGGCATCGGTAGCTTTGCCGTCATTATTgac > 1:1443583/1‑49 (MQ=255) aGACGAGGCGCGATGACGGCATCGGTCGCCTTGCCGTCatt < 1:3350893/41‑1 (MQ=38) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTTCAGGCAGATCGCCTa < 1:1849029/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:41662/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:2287629/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:2932557/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:1366610/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:179715/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:180250/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:1809792/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:1848738/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:2002611/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:2963912/68‑1 (MQ=255) aCGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:2753016/68‑1 (MQ=255) aTGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTa < 1:758030/58‑1 (MQ=255) ggCATCGGTCGCCTTGCCGTCATTATTGACTACCa > 1:2474577/1‑35 (MQ=21) ggCATCGGTCGCCTTGCCGTCATTATTGACTACCAGTgca > 1:2893577/1‑40 (MQ=25) ggCATCGGTCGCCTTGCCGTCATTATTGACTACCAGTgca > 1:103408/1‑40 (MQ=25) ggCATCGGTCGCCTTGCCGTCATTATTGACTACCAGTgca > 1:88191/1‑40 (MQ=25) ggCATCGGTCGCCTTGCCGTCATTATTGACTACCAGTgca > 1:1057259/1‑40 (MQ=25) ggCATCGGTCGCCTTGCCGTCATTATTGACTACCAGTgca > 1:2333446/1‑40 (MQ=25) ggCATCGGTCGCCTTGCCGTCATTATTGACTACCAGTgca > 1:1880384/1‑40 (MQ=25) ggCATCGGTCGCCTTGCCGTCATTATTGACTACCAGTgca > 1:1030232/1‑40 (MQ=25) aTCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTAAATGCCCGGCACCTTCTgg > 1:1277583/1‑69 (MQ=255) aTCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTAAATGCCCGGCACCTTCTgg > 1:3390090/1‑69 (MQ=255) aTCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTAAATGCCCGGCACCTTCTgg > 1:217521/1‑69 (MQ=255) aGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTAAATGCCCGGc > 1:2547158/1‑54 (MQ=255) aGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTAAATGCCCGGc > 1:1142765/1‑54 (MQ=255) gCTTTGCCGTCATTATTGACGACCAGTggaggcag < 1:163561/35‑1 (MQ=255) | CGCTTTGTCTTTGATTTCATCCAGTGATTTCAGACGAGGCGCGATGACGGCATCGGTAGCTTTGCCGTCATTATTGACGACCAGTGCAGGCAGATCGCCTAAATGCCCGGCACCTTCTGG > minE/1051918‑1052037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |