| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,063,766 | T→C | 29.9% | intergenic (+116/+46) | sodB → / ← ydhP | superoxide dismutase, Fe/predicted transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,063,766 | 0 | T | C | 29.9% | 52.3 / 26.2 | 60 | intergenic (+116/+46) | sodB/ydhP | superoxide dismutase, Fe/predicted transporter |
| Reads supporting (aligned to +/- strand): ref base T (3/39); new base C (13/5); total (16/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 | |||||||||||
CGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCA > minE/1063702‑1063829 | cgcgGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAg > 1:364092/1‑68 (MQ=255)cgcgGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGc > 1:941024/1‑69 (MQ=255) tcatcGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGt < 1:951087/69‑1 (MQ=255) tcatcGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGt < 1:1328545/69‑1 (MQ=255) cGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:1981736/69‑1 (MQ=255) cGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:2039752/69‑1 (MQ=255) cGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:171389/69‑1 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:1267247/68‑1 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa < 1:360865/68‑1 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTAt < 1:399875/69‑1 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTAt < 1:1126948/69‑1 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTAt < 1:2514655/69‑1 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTAt < 1:2265313/69‑1 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTAt < 1:207292/69‑1 (MQ=255) ggATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTAt < 1:3337388/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:3049192/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:717757/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:2937708/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:2884673/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:502169/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:1962607/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:1121776/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:1839319/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:1522198/69‑1 (MQ=255) aTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc < 1:1755557/69‑1 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTg > 1:1964241/1‑58 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:675294/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:1251676/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:1368584/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:1428121/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:2932671/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:2907726/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:1798476/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:893414/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:2754507/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:2361115/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:2302072/1‑69 (MQ=255) aGATAAATCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCt > 1:1873680/1‑69 (MQ=255) gATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTg < 1:558457/69‑1 (MQ=255) gATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTg < 1:3074871/69‑1 (MQ=255) aaaTCGCACGTTGTCAGCAACTGTAACGCATAAGGTTATcc < 1:2712535/41‑1 (MQ=255) aaTCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTa > 1:415826/1‑68 (MQ=255) aTCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGc < 1:938373/69‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGc < 1:1059437/68‑1 (MQ=255) tCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGc < 1:731638/68‑1 (MQ=255) tCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTGGc < 1:328514/68‑1 (MQ=255) tCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTGGc < 1:3107070/68‑1 (MQ=255) tCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTGGc < 1:762656/68‑1 (MQ=255) tCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTGGc < 1:2785917/68‑1 (MQ=255) tCGCACGTTGCCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTGGc < 1:503827/68‑1 (MQ=255) cGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:1101730/69‑1 (MQ=255) cGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:472456/69‑1 (MQ=255) cGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:3230744/69‑1 (MQ=255) cGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:3156818/69‑1 (MQ=255) cGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:2962558/69‑1 (MQ=255) cGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:2787503/69‑1 (MQ=255) cGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:1946971/69‑1 (MQ=255) cGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:154820/69‑1 (MQ=255) cGTTGTCAGCAACTGTAACGCAGAAGGTTATCATTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:349105/69‑1 (MQ=255) gTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCa < 1:2882164/68‑1 (MQ=255) | CGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTTGTTTAATTAGCTGTTAGCAACGCA > minE/1063702‑1063829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |