| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,065,177 | T→C | 24.2% | intergenic (‑196/‑358) | ydhP ← / → purR | predicted transporter/DNA‑binding transcriptional repressor, hypoxanthine‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,065,177 | 0 | T | C | 24.2% | 40.8 / 9.4 | 37 | intergenic (‑196/‑358) | ydhP/purR | predicted transporter/DNA‑binding transcriptional repressor, hypoxanthine‑binding |
| Reads supporting (aligned to +/- strand): ref base T (13/15); new base C (3/6); total (16/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
GGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAATTTAAGG > minE/1065121‑1065225 | ggAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCg > 1:1130489/1‑69 (MQ=255)ggAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCg < 1:2772183/69‑1 (MQ=255)ggAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCg < 1:3285565/69‑1 (MQ=255)ggAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCg > 1:205450/1‑69 (MQ=255) agaACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAg > 1:1529278/1‑69 (MQ=255) agaACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAg > 1:2036741/1‑69 (MQ=255) cgcgCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGAc > 1:1774391/1‑68 (MQ=255) cgcgCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGAc > 1:1323506/1‑68 (MQ=255) cgcgCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGAc > 1:3191143/1‑68 (MQ=255) cgcgCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACg < 1:2135942/69‑1 (MQ=255) cgcgCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACACACGGCTACGATCAAACCGAGGAc > 1:1126518/1‑68 (MQ=255) gcTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATa < 1:764664/69‑1 (MQ=255) gcTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATa < 1:265123/69‑1 (MQ=255) gcTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATa < 1:2682797/69‑1 (MQ=255) cGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCCACGATCAAACCGAGGACGATAATCgtt > 1:704252/1‑68 (MQ=255) cGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCCACGATCAAACCGAGGACGATAATCgtt > 1:62750/1‑68 (MQ=255) cGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCCACGATCAAACCGAGGACGATAATCgtt > 1:819885/1‑68 (MQ=255) gagaGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGAc < 1:1507273/57‑1 (MQ=255) ggAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTAcc < 1:773727/69‑1 (MQ=255) ggAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTAcc < 1:3388260/69‑1 (MQ=255) ggAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTAcc < 1:3285822/69‑1 (MQ=255) ggAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTAcc < 1:2539820/69‑1 (MQ=255) ggAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTAcc < 1:2753547/69‑1 (MQ=255) ggAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTAcc < 1:2298133/69‑1 (MQ=255) ggAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTAcc < 1:1524129/69‑1 (MQ=255) aaaTCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTAcc < 1:3094308/67‑1 (MQ=255) cAGCGCGGCAGTCAAACCCACGGCCACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAAttt < 1:2710059/69‑1 (MQ=255) cAGCGCGGCAGTCAAACCCACGGCCACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAAttt < 1:3128339/69‑1 (MQ=255) cAGCGCGGCAGTCAAACCCACGGCCACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAAttt < 1:1886442/69‑1 (MQ=255) cAGCGCGGCAGTCAAACCCACGGCCACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAAttt < 1:1769560/69‑1 (MQ=255) cAGCGCGGCAGTCAAACCCACGGCCACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAAttt < 1:821707/69‑1 (MQ=255) cAGCGCGGCAGTCAAACCCACGGCCACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAAttt < 1:827780/69‑1 (MQ=255) gcgGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAATTTAAgg > 1:1933970/1‑69 (MQ=255) gcgGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAATTTAAgg > 1:184730/1‑69 (MQ=255) gcgGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAATTTAAgg > 1:1779865/1‑69 (MQ=255) gcgGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAATTTAAgg > 1:1677053/1‑69 (MQ=255) gcgGCAGTCAAACCCACGGCTACGATCAAACCCAGGACGATAATCGTTGTTACCAGTGAAAATTTAAgg > 1:2300344/1‑69 (MQ=255) | GGAGAACGCGCTCCCTCGAGAGGAAATCAGTGCAGCGCGGCAGTCAAACCCACGGCTACGATCAAACCGAGGACGATAATCGTTGTTACCAGTGAAAATTTAAGG > minE/1065121‑1065225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |