| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,106,393 | T→C | 63.0% | E200E (GAA→GAG) | ydiP ← | predicted DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,106,393 | 0 | T | C | 63.0% | 37.4 / 35.3 | 62 | E200E (GAA→GAG) | ydiP | predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (12/11); new base C (27/12); total (39/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
ACGATACTCTTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAATTATTATTCAGATAGAAAAGAATATCTTTTATCAG > minE/1106327‑1106452 | aCGATACTCTTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGtt > 1:1508647/1‑68 (MQ=255)aCGATACTCTTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGtt > 1:2297967/1‑68 (MQ=255)aCGATACTCTTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGtt > 1:2167171/1‑68 (MQ=255)aCGATACTCTTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGtt > 1:1183106/1‑68 (MQ=255)aCGATACTCTTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGt > 1:2135125/1‑67 (MQ=255)aCGATACTCTTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGt > 1:2225232/1‑67 (MQ=255)aCGATACTCTTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGt > 1:1262301/1‑67 (MQ=255) ctctTTGGTAAGTTCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGt < 1:2566143/69‑1 (MQ=255) ctctTTGGTAAATTCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGt < 1:3015321/69‑1 (MQ=255) ctctTTGGTAAATTCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGt < 1:995735/69‑1 (MQ=255) ctctTTGGTAAATTCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGt < 1:2890692/69‑1 (MQ=255) ctctTTGGTAAATTCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGt < 1:175633/69‑1 (MQ=255) ctctTTGGTAAATTCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGt < 1:2994561/69‑1 (MQ=255) ctctTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGt > 1:3187407/1‑69 (MQ=255) ttCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTcgc > 1:2575699/1‑68 (MQ=255) ttCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTcgc > 1:1130043/1‑68 (MQ=255) tCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGa < 1:1949635/69‑1 (MQ=255) tCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGa < 1:997251/69‑1 (MQ=255) tCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGa < 1:1160667/69‑1 (MQ=255) tCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGa < 1:1190818/69‑1 (MQ=255) tCATGGCAGATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGa < 1:854626/69‑1 (MQ=255) gCAAATATAACTGACGCTTGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAatt < 1:2209756/69‑1 (MQ=255) gCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAatt < 1:962640/69‑1 (MQ=255) gCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAatt < 1:419639/69‑1 (MQ=255) gCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAatt < 1:1377028/69‑1 (MQ=255) gCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAatt < 1:3235771/69‑1 (MQ=255) atatAACTGACGCTTGCACGAAATTTTTTCGATAACTGCTCTAAAGt < 1:1789762/47‑1 (MQ=255) tataACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGAtt > 1:2333636/1‑50 (MQ=255) tataACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAattatta > 1:1452256/1‑68 (MQ=255) tataACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAattatta > 1:2072349/1‑68 (MQ=255) tataACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAattatta > 1:670315/1‑68 (MQ=255) tataACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAattatta > 1:2384549/1‑68 (MQ=255) tataACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAattatta > 1:2460932/1‑68 (MQ=255) tataACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAattatta > 1:1100436/1‑68 (MQ=255) gACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAATTATTATTCAGAt > 1:1479240/1‑68 (MQ=255) ggCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAATTATTATTCAGATAGAAAAg < 1:2924802/69‑1 (MQ=255) ggCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAATTATTATTCAGATAGAAAAg > 1:2548172/1‑69 (MQ=255) gCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAatt < 1:2713888/50‑1 (MQ=255) aCGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCTATAATTATTATTCAGATAGAAAAGAat < 1:2178334/69‑1 (MQ=255) aCGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAATTATTATTCAGATAGAAAAGAat < 1:2552538/69‑1 (MQ=255) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:3430624/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:3292492/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:3433844/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:3198622/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:453095/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:3165004/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:786233/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:791446/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2479274/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2207677/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:1129167/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:1164573/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:1449660/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:1516426/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:1554698/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:1892164/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2965619/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2233833/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2258073/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2623292/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2639995/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2642030/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2686879/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2710343/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2712280/1‑40 (MQ=39) aTTTTTTCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:2794380/1‑40 (MQ=39) aTTTTTGCGATAACTGCTCTAAAGTGATTTTTTCGCGATagt > 1:436085/1‑40 (MQ=255) gATAACTGTTCTAAAGTGATTTTTTCGCGATAATTATTATTCAGATAGAAAAGAATATCTTTTATCAg < 1:2186830/68‑1 (MQ=255) gATAACTGTTCTAAAGTGATTTTTTCGCGATAATTATTATTCAGATAGAAAAGAATATCTTTTATCAg < 1:2036556/68‑1 (MQ=255) | ACGATACTCTTTGGTAAATTCATGGCAAATATAACTGACGCTGGCACGAAATTTTTTCGATAACTGTTCTAAAGTGATTTTTTCGCGATAATTATTATTCAGATAGAAAAGAATATCTTTTATCAG > minE/1106327‑1106452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |