Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,133,307 T→A 51.0% P156P (CCA→CCT ydiY ← conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,133,3070TA51.0% ‑3.9 / 59.3 49P156P (CCA→CCTydiYconserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (18/6);  new base A (9/16);  total (27/22)
Fisher's exact test for biased strand distribution p-value = 9.60e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCCGGAGGCATAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGCCATTCAAAAACTGACGACCAT  >  minE/1133241‑1133362
                                                                  |                                                       
cccGGAGGCATAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTgg                                                       >  1:2066319/1‑69 (MQ=255)
         aTAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:1224260/1‑68 (MQ=255)
         aTAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:29498/1‑68 (MQ=255)
         aTAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:2196674/1‑68 (MQ=255)
         aTAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:2107146/1‑68 (MQ=255)
          tAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:1050531/1‑67 (MQ=255)
          tAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:1239111/1‑67 (MQ=255)
          tAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:1417625/1‑67 (MQ=255)
          tAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:886095/1‑67 (MQ=255)
          tAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:86204/1‑67 (MQ=255)
          tAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAAtt                                               >  1:222905/1‑67 (MQ=255)
            gCCCAGCGGCTGGGTTTCTCTGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCaaa                                           >  1:1040855/1‑69 (MQ=255)
            gCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAAtt                                               >  1:2893748/1‑65 (MQ=255)
            gCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCaaa                                           >  1:3043715/1‑69 (MQ=255)
            gCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCaaa                                           >  1:2660972/1‑69 (MQ=255)
            gCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCaaa                                           >  1:2304343/1‑69 (MQ=255)
            gCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCaaa                                           >  1:637578/1‑69 (MQ=255)
            gCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCaaa                                           >  1:719299/1‑69 (MQ=255)
            gCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCaaa                                           >  1:729922/1‑69 (MQ=255)
            gCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCaa                                            >  1:3409404/1‑68 (MQ=255)
                     cTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACt                                  <  1:3094716/69‑1 (MQ=255)
                     cTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACt                                  <  1:124779/69‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGc                       <  1:1962125/69‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGc                       <  1:2826845/69‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAATTCAAAGCCGAAACTGTGTACCGGGc                       <  1:104007/69‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:3368258/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:3317818/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:3304121/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:3273388/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:3231964/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:939876/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:1755535/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:1765243/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:2431375/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:2241177/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:2073342/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:1814854/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:1907490/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:1861641/59‑1 (MQ=255)
                                tGGCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:1855939/59‑1 (MQ=255)
                                 ggCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGcc                      <  1:2461208/69‑1 (MQ=255)
                                 ggCATTGTCGGTATATTTGTCGTAACGCACACCAGGGCCGAATTCAAAGCGGAAACtg                                 <  1:2452268/58‑1 (MQ=255)
                                                tttGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGCCATTCAAAAACTgacg       >  1:664826/1‑69 (MQ=255)
                                                tttGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGCCATTCAAAAACTgacg       >  1:771338/1‑69 (MQ=255)
                                                tttGTCGTAACCCACACCTGGACCGAATTCAAAGCGGAAACTGTGAACCGGGCCATTCAAAAACTgacg       >  1:2735237/1‑69 (MQ=255)
                                                  tGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGCCATTCAAAAACTgacgac     >  1:625559/1‑69 (MQ=255)
                                                  tGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGCCATTCAAAAACTgacga      >  1:3102491/1‑68 (MQ=255)
                                                      gTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGCCATTCAAAAACTGACGACCAt  >  1:534818/1‑68 (MQ=255)
                                                      gTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGCCATTCAAAAACTGACGACCAt  >  1:2493834/1‑68 (MQ=255)
                                                                  |                                                       
CCCGGAGGCATAGCCCAGCGGCTGGGTTTCACTGGCATTGTCGGTATATTTGTCGTAACGCACACCTGGACCGAATTCAAAGCGGAAACTGTGTACCGGGCCATTCAAAAACTGACGACCAT  >  minE/1133241‑1133362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: