| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,154,282 | C→T | 39.1% | Q111Q (CAG→CAA) | astE ← | succinylglutamate desuccinylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,154,282 | 0 | C | T | 39.1% | 23.5 / 31.4 | 51 | Q111Q (CAG→CAA) | astE | succinylglutamate desuccinylase |
| Reads supporting (aligned to +/- strand): ref base C (9/22); new base T (8/12); total (17/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.59e-01 | |||||||||||
ACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTC > minE/1154233‑1154333 | aCTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACa < 1:680316/69‑1 (MQ=255)aCTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACa < 1:1897368/69‑1 (MQ=255)aCTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACa < 1:3233989/69‑1 (MQ=255) aGTTCGCGCGCCCGACAGGTTTCCCCGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTc > 1:1820818/1‑64 (MQ=255) aGTTCGCGCGCCCGACAGGTTTCCCCGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTc > 1:2462028/1‑64 (MQ=255) aGTTCGCGCGCCCGACAGGTTTCCCCGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTc > 1:2389062/1‑64 (MQ=255) aGTTCGCGCGCCCGACAGGTTTCCCCGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTc > 1:443421/1‑64 (MQ=255) aGTTCGCGCGCCCGACAGGTTTCCCCGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTc > 1:1030149/1‑64 (MQ=255) aGTTCGCGCGCCCGACAGGTTTCCCCGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTc > 1:3281070/1‑64 (MQ=255) aGTTCGCGCGCCCGACAGGTTTCCCCGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTc > 1:118269/1‑64 (MQ=255) aGTTCACGCGCCCGACAGGTTTCCCCGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTc > 1:546486/1‑64 (MQ=255) ttCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCat < 1:2649894/69‑1 (MQ=255) gcgcCCGACAGTTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGc < 1:1629378/69‑1 (MQ=255) gcgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGc < 1:1158832/69‑1 (MQ=255) cgcCCGAGAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:2845555/69‑1 (MQ=255) cgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:449982/69‑1 (MQ=255) cgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:108139/69‑1 (MQ=255) cgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:620180/69‑1 (MQ=255) cgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:2578673/69‑1 (MQ=255) cgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:3293734/69‑1 (MQ=255) cgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:819578/69‑1 (MQ=255) cgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:2373936/69‑1 (MQ=255) cgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:1712802/69‑1 (MQ=255) cccGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTAt > 1:1395677/1‑69 (MQ=255) cccGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTAt > 1:2188277/1‑69 (MQ=255) cccGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTAt > 1:3270051/1‑69 (MQ=255) cccGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTAt > 1:3196990/1‑69 (MQ=255) cccGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTAt > 1:1743735/1‑69 (MQ=255) cccGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTAt > 1:2971242/1‑69 (MQ=255) cccGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTAt > 1:3094922/1‑69 (MQ=255) aCAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACa < 1:253967/47‑1 (MQ=255) aCAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCt < 1:2016913/63‑1 (MQ=255) gTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATaa < 1:381129/69‑1 (MQ=255) gTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATaa < 1:2519827/69‑1 (MQ=255) gTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTATCGCAATaa < 1:1668385/69‑1 (MQ=255) tcCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGtt < 1:3034708/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:826779/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:996418/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:3421224/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:3349418/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:3336030/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:3091488/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:2961620/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:2900568/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:2818303/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:2461468/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTc < 1:156092/68‑1 (MQ=255) cGCTTTCAGCAAACAGTTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACATTTc < 1:2168035/68‑1 (MQ=255) cTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGc < 1:2580323/49‑1 (MQ=255) cAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCat > 1:617174/1‑40 (MQ=255) cAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCa > 1:2473660/1‑39 (MQ=255) | ACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATTCGATTCATATCGCTATGGCAATAACGTTTC > minE/1154233‑1154333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |