| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,168,168 | C→A | 26.8% | G337G (GGC→GGA) | ynjE → | predicted thiosulfate sulfur transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,168,168 | 0 | C | A | 26.8% | 98.1 / 27.9 | 63 | G337G (GGC→GGA) | ynjE | predicted thiosulfate sulfur transferase |
| Reads supporting (aligned to +/- strand): ref base C (31/15); new base A (8/9); total (39/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAGATTTTCATAACCCGGAT > minE/1168109‑1168228 | gAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGAGCACGTTg > 1:248057/1‑68 (MQ=255)gAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGAGCACGTTg > 1:48195/1‑68 (MQ=255)gAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGAGCACGTTg > 1:766919/1‑68 (MQ=255)gAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGAGCACGTTg > 1:2914988/1‑68 (MQ=255)gAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGAGCACGTTg > 1:3121370/1‑68 (MQ=255)gAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGAGCACGTTg > 1:2964481/1‑68 (MQ=255)gAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGAGCACGTTg > 1:992032/1‑68 (MQ=255)gAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGAGCACGTTg > 1:2193413/1‑68 (MQ=255) tttATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGa < 1:2974167/69‑1 (MQ=255) tttATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGa < 1:3156853/69‑1 (MQ=255) tttATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGa < 1:1554845/69‑1 (MQ=255) tttATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGa < 1:1595493/69‑1 (MQ=255) ttATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGa < 1:1914999/68‑1 (MQ=255) tATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGa < 1:2326307/67‑1 (MQ=255) tACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTgg < 1:2139249/69‑1 (MQ=255) tACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTgg < 1:194949/69‑1 (MQ=255) gTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGa > 1:1678319/1‑69 (MQ=255) tACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGAc > 1:2975780/1‑68 (MQ=255) tACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACg > 1:433365/1‑69 (MQ=255) tACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACg > 1:3282161/1‑69 (MQ=255) tACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACg > 1:1033203/1‑69 (MQ=255) tACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACg > 1:520185/1‑69 (MQ=255) tACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACg > 1:2041079/1‑69 (MQ=255) aGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCa < 1:2318080/68‑1 (MQ=255) aGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCa < 1:3062652/68‑1 (MQ=255) aGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGATAGCGACTCGACGCa < 1:2461581/68‑1 (MQ=255) tataTTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGTGTACACGCTGGTAGCGACTCGACGCa < 1:2185239/65‑1 (MQ=255) tatTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCatat > 1:1434172/1‑66 (MQ=255) tatTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCatat > 1:3127838/1‑66 (MQ=255) tatTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCatat > 1:2859808/1‑66 (MQ=255) tatTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCatat > 1:933559/1‑66 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:557511/1‑63 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:2448851/1‑63 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:1355710/1‑63 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:3123319/1‑63 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:975856/1‑63 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:2955112/1‑63 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:125803/1‑63 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:1165098/1‑63 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:2270825/1‑63 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCat > 1:1117236/1‑62 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGaa > 1:3431953/1‑68 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAg > 1:2360073/1‑69 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAg > 1:1143446/1‑69 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAg > 1:1262377/1‑69 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAg > 1:1304222/1‑69 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAg > 1:1780803/1‑69 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAg > 1:2613304/1‑69 (MQ=255) ttAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAg > 1:2872349/1‑69 (MQ=255) ttAAACCAAAAGGTGAAATAGCAGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCata > 1:3029810/1‑63 (MQ=255) atAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAg > 1:3293010/2‑69 (MQ=255) aaaCCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAGa < 1:3103393/68‑1 (MQ=255) ccAAAAGGTGAAATAGCCGGAGCACGTTGGGGACACGCAGGTAGCGACTCGACGCATATGGAAGAttt < 1:2447107/68‑1 (MQ=255) ccAAAAGGTGAAATAGCCGGAGCACGTTGGGGACACGCAGGTAGCGACTCGACGCATATGGAAGAttt < 1:240250/68‑1 (MQ=255) ccAAAAGGTGAAATAGCCGGAGCACGTTGGGGACACGCAGGTAGCGACTCGACGCATATGGAAGAttt < 1:1459738/68‑1 (MQ=255) ccAAAAGGTGAAATAGCCGGAGCACGTTGGGGACACGCAGGTAGCGACTCGACGCATATGGAAGAttt < 1:725243/68‑1 (MQ=255) ccAAAAGGTGAAATAGCCGGAGCACGTTGGGGACACGCAGGTAGCGACTCGACGCATATGGAAGAttt < 1:818206/68‑1 (MQ=255) ccAAAAGGTGAAATAGCCGGAGCACGTTGGGGACACGCAGGTAGCGACTCGACGCATATGGAAGAttt < 1:833095/68‑1 (MQ=255) ccAAAAGGTGAAATAGCCGGAGCACGTTGGGGACACGCAGGTAGCGACTCGACGCATATGGAAGAttt < 1:293612/68‑1 (MQ=255) ccAAAAGGTGAAATAGCCGGAGCACGTTGGGGACACGCAGGTAGCGACTCGACGCATATGGAAGAttt < 1:3013491/68‑1 (MQ=255) tAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAGATTTTCATAACCCGGAt < 1:721680/68‑1 (MQ=255) tAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAGATTTTCATAACCCGGAt < 1:141261/68‑1 (MQ=255) ccGGAGCACGTTGGGGACACGCAGGTAGCGACTCGACGCATATGGAAGAttt < 1:2796902/52‑1 (MQ=255) | GAATTTATCGGTACGACCAGCGGTTACAGCTATATTAAACCAAAAGGTGAAATAGCCGGCGCACGTTGGGGACACGCTGGTAGCGACTCGACGCATATGGAAGATTTTCATAACCCGGAT > minE/1168109‑1168228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |