| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,168,459 | C→T | 25.9% | S434S (AGC→AGT) | ynjE → | predicted thiosulfate sulfur transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,168,459 | 0 | C | T | 25.9% | 115.8 / 34.9 | 96 | S434S (AGC→AGT) | ynjE | predicted thiosulfate sulfur transferase |
| Reads supporting (aligned to +/- strand): ref base C (37/34); new base T (8/17); total (45/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCC > minE/1168398‑1168520 | aCGAATGGAGCAGCGATCGAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAAc > 1:1395062/1‑69 (MQ=255)aCGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAAc > 1:2269456/1‑69 (MQ=255)aCGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAAc > 1:2984604/1‑69 (MQ=255)aCGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAAc > 1:2988156/1‑69 (MQ=255)aCGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAAc > 1:807647/1‑69 (MQ=255)aCGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAAc > 1:1716861/1‑69 (MQ=255)aCGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAAc > 1:2599239/1‑69 (MQ=255)aCGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAAc > 1:1044434/1‑69 (MQ=255)aCGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAAAAAc > 1:3041673/1‑69 (MQ=255) gAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCa > 1:3129455/1‑68 (MQ=255) gAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCa > 1:2069387/1‑68 (MQ=255) gAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCa > 1:2941720/1‑68 (MQ=255) gAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCa > 1:468379/1‑68 (MQ=255) gAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCa > 1:597315/1‑68 (MQ=255) gAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCa > 1:2125747/1‑68 (MQ=255) gAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCa > 1:1418274/1‑68 (MQ=255) gAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCa > 1:1153787/1‑68 (MQ=255) gcagcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAAt < 1:1995535/68‑1 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTAc > 1:2331810/1‑68 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:3008120/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:2163516/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:2412216/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:2435591/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:2394353/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:3155666/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:3145821/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:1881418/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:1877416/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:1839303/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:354998/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:1771773/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:2682051/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:837873/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:917445/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACt > 1:2943838/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAAATACt > 1:1384250/1‑69 (MQ=255) gcGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATAGCAATTACt > 1:185341/1‑69 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATaa < 1:2458633/51‑1 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATaa < 1:2294612/51‑1 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTTCTGACGc > 1:2638737/1‑69 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGc > 1:1113496/1‑69 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGc > 1:223873/1‑69 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGc > 1:2040188/1‑69 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGc > 1:2021985/1‑69 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGc > 1:498655/1‑69 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGc > 1:1580239/1‑69 (MQ=255) ccAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGc > 1:1548961/1‑69 (MQ=255) aaaaaTCCGGTAGCAACCGGTGAACGCGGCCCGTACAGTAGCAAATAACATTGc < 1:280391/54‑1 (MQ=255) aaaaaTCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGc < 1:2013539/54‑1 (MQ=255) ccGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGAc < 1:2942014/69‑1 (MQ=255) ccGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGAc < 1:3172539/69‑1 (MQ=255) ccGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGAc < 1:2751791/69‑1 (MQ=255) ccGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGAc < 1:2586762/69‑1 (MQ=255) gTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTc < 1:2643767/69‑1 (MQ=255) gTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTc < 1:2694872/69‑1 (MQ=255) gTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTc < 1:1372997/69‑1 (MQ=255) gTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTc < 1:774708/69‑1 (MQ=255) tAGCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCT‑‑AGCGACTTCAGc < 1:3316742/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:2626279/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:845176/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:1405739/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:562118/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:1620072/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:1670838/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:413090/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:352447/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:1828302/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:3019911/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:2470075/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:2469935/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:2390263/69‑1 (MQ=255) gCAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:2369145/69‑1 (MQ=255) cAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:845136/68‑1 (MQ=255) cAACCGGTGAACGCGGCCCGGACAGCAGTAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGc < 1:585009/68‑1 (MQ=255) ggTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGa < 1:1948019/69‑1 (MQ=255) ggTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGa < 1:1605668/69‑1 (MQ=255) ggTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGa < 1:591554/69‑1 (MQ=255) ggTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGa < 1:2155405/69‑1 (MQ=255) gTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGa < 1:976756/68‑1 (MQ=255) gTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGa < 1:2624896/68‑1 (MQ=255) gTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGa < 1:454838/68‑1 (MQ=255) gTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGa < 1:2142980/68‑1 (MQ=255) gAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTc < 1:1942522/57‑1 (MQ=255) aaCGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATAcc < 1:295968/69‑1 (MQ=255) aaCGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATAcc < 1:2121706/69‑1 (MQ=255) aaCGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATAcc < 1:2843736/69‑1 (MQ=255) aaCGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATAcc < 1:777815/69‑1 (MQ=255) aaCGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATAcc < 1:920348/69‑1 (MQ=255) aaCGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGCAGCGACTTCAGCGTCAGATAcc < 1:3142246/69‑1 (MQ=255) cgcgGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCa < 1:1781067/69‑1 (MQ=255) cgcgGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCa < 1:349310/69‑1 (MQ=255) cgcgGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCa < 1:3169764/69‑1 (MQ=255) cgcgGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCa < 1:1420412/69‑1 (MQ=255) cgcgGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCa < 1:2727957/69‑1 (MQ=255) cgcgGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCa < 1:2093501/69‑1 (MQ=255) aCAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACAccc > 1:1828891/1‑69 (MQ=255) | ACGAATGGAGCAGCGATCCAAAAAATCCGGTAGCAACCGGTGAACGCGGCCCGGACAGTAGCAAATAACATTGCAATTACTGACGCTGGAGCGACTTCAGCGTCAGATACCCACTCCACACCC > minE/1168398‑1168520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |