| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,168,929 | C→T | 47.8% | V56I (GTC→ATC) | ynjF ← | predicted phosphatidyl transferase, inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,168,929 | 0 | C | T | 47.8% | 3.8 / 58.5 | 69 | V56I (GTC→ATC) | ynjF | predicted phosphatidyl transferase, inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (11/25); new base T (23/10); total (34/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.68e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGACCATCAAGCAGCCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAATCCCACT > minE/1168894‑1168996 | cAGACCATCATGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:706621/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAg > 1:449231/1‑39 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGa > 1:2418550/1‑49 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:1948736/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:2783641/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:3087268/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:3310630/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:27138/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:1461833/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:1451053/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:1422407/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:538662/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:1346980/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:202263/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:2193324/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:2405717/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:2401891/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:102682/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:2237372/1‑59 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGCCGCCAGATAccag > 1:170434/1‑55 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGATTAGCGC‑‑CCAGATAccagccca > 1:1031071/1‑57 (MQ=255)cAGACCATCAAGCAGCCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaa > 1:2763838/1‑69 (MQ=255)cAGACCATCAAGCAGCCTGTTAAACAAAATGACGATTAGCGCCGCCAGATAccagcaca > 1:2635123/1‑59 (MQ=255)cAGACCATCAAGCAGCCTCTTCAACAAAATGACGATTAGCGCCGCCAGATAccagccca > 1:769789/1‑59 (MQ=255)cAGACCAT‑AAGCAGCCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAAc > 1:1927711/1‑69 (MQ=255) aCCATCAAGCAGCCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACgg < 1:790208/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:978043/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:641152/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:64681/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:684261/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:749643/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:1051314/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:1765931/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:172579/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:1266210/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:1849217/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:1080751/69‑1 (MQ=255) cagcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:2236907/69‑1 (MQ=255) gcCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAg < 1:2497802/67‑1 (MQ=255) cTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACg < 1:765954/69‑1 (MQ=255) cTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACg < 1:1193844/69‑1 (MQ=255) cTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACg < 1:265400/69‑1 (MQ=255) cTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACg < 1:1264753/69‑1 (MQ=255) gTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGcc < 1:2220304/69‑1 (MQ=255) gTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGcc < 1:2916307/69‑1 (MQ=255) caacaaAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGa > 1:1112976/1‑68 (MQ=255) caacaaAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGa > 1:927067/1‑68 (MQ=255) caacaaAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGAt > 1:865914/1‑69 (MQ=255) caacaaAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGAt > 1:628393/1‑69 (MQ=255) caacaaAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGAt > 1:1758517/1‑69 (MQ=255) caacaaAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGAt > 1:3122806/1‑69 (MQ=255) caacaaAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGAt > 1:2389350/1‑69 (MQ=255) caacaaAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGAt > 1:2461197/1‑69 (MQ=255) caacaaAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGAt > 1:272375/1‑69 (MQ=255) aaaaTGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCa < 1:797648/69‑1 (MQ=255) aaaaTGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCa < 1:793738/69‑1 (MQ=255) aaaaTGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCa < 1:2837149/69‑1 (MQ=255) aaTGACGATTAGCGCCGCCAGATACCAGCCCATCGCCAGaaaa < 1:3314156/43‑2 (MQ=37) aaTGACGATTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaaa < 1:3022615/43‑2 (MQ=255) aaTGACGATTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaaa < 1:917053/43‑2 (MQ=255) aaTGACGATTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaaa < 1:2508698/43‑2 (MQ=255) aaTGACGATTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaaa < 1:2532269/43‑2 (MQ=255) aaTGACGATTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaaa < 1:1248702/43‑2 (MQ=255) aaTGACGATTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaaa < 1:1800816/43‑2 (MQ=255) aaTGACGATTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaaa < 1:3284264/43‑2 (MQ=255) aaTGACGATTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaaa < 1:312157/43‑2 (MQ=255) aTGACGATTAGCGCCGCCAGATACCAGCCCAGCGCCAGaaaa < 1:620905/42‑2 (MQ=255) aTGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAAt < 1:569057/69‑1 (MQ=255) aTGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAAt < 1:1391582/69‑1 (MQ=255) gacgacTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAATcc < 1:1781765/69‑1 (MQ=255) gacgacTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAATcc < 1:2933589/69‑1 (MQ=255) gacgacTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAATcc < 1:2191438/69‑1 (MQ=255) gacgacTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAATcc < 1:926154/69‑1 (MQ=255) gacTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACg < 1:2027375/52‑1 (MQ=255) acTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGGACGCCGATGGCAAATCCCACt > 1:138434/1‑69 (MQ=255) acTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAATCCCACt > 1:2403629/1‑69 (MQ=255) acTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAATCCCACt > 1:2350743/1‑69 (MQ=255) | CAGACCATCAAGCAGCCTGTTCAACAAAATGACGACTAGCGCCGCCAGATACCAGCCCAGCGCCAGAAACGGCAGAGCCAGCACGCCGATGGCAAATCCCACT > minE/1168894‑1168996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |