| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,259,181 | G→C | 45.1% | A581A (GCC→GCG) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,259,181 | 0 | G | C | 45.1% | 10.4 / 55.5 | 51 | A581A (GCC→GCG) | torZ | trimethylamine N‑oxide reductase system III, catalytic subunit |
| Reads supporting (aligned to +/- strand): ref base G (16/12); new base C (17/6); total (33/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATAGTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGTATAG > minE/1259119‑1259247 | tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCAcc > 1:3215139/1‑68 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCAcc > 1:1287253/1‑68 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:1155103/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:1131814/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:3214302/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:1965783/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:1709657/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:378268/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:401612/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:1658017/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:51956/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:649823/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:1396320/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:1217421/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:1207930/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:871249/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATCGTCACGCGTTGCGCACGCGCACCt > 1:910305/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATAGTGACGCGTTGCGCACGGGCACCt > 1:1467260/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATAGTGACGCGTTGCGCACGGGCACCt > 1:16974/1‑69 (MQ=255)tCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATAGTGACGCGTTGCGCACGGGCACCt > 1:3404045/1‑69 (MQ=255) tATTTTGCTGCCAGAAGGCATTAAACATTGGCATAGTGACGCGTTGCGCACGGGCACCTTTCTGAGCg > 1:2287713/1‑68 (MQ=255) ggCATCGTCACGCGTTGCGCACGCGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCAtt < 1:738051/69‑1 (MQ=255) ggCATCGTCACGCGTTGCGCACGCGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCAtt < 1:3105383/69‑1 (MQ=255) ggCATCGTCACGCGTTGCGCACGCGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCAtt < 1:310206/69‑1 (MQ=255) ggCATCGTCACGCGTTGCGCACGCGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCAtt < 1:3031293/69‑1 (MQ=255) ggCATCGTCACGCGTTGCGCACGCGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCAtt < 1:2747374/69‑1 (MQ=255) ggCATCGTCACGCGTTGCGCACGCGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCAtt < 1:2173266/69‑1 (MQ=255) aTAGTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTc < 1:2164641/68‑1 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGc > 1:1699427/1‑35 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGaaaa > 1:1173992/1‑46 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGaaaa > 1:2964709/1‑46 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGaaaa > 1:843806/1‑46 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGaaaa > 1:1284415/1‑46 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGaaaa > 1:2076418/1‑46 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGaaaa > 1:1429181/1‑46 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGaaaa > 1:1588544/1‑46 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGaaaa > 1:3384713/1‑46 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGc > 1:929903/1‑54 (MQ=255) gTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATc > 1:1806507/1‑68 (MQ=255) gTGACGCGTTGCGCACGGGCACATTTCTGAGCGGCATCATAGaaaa > 1:2814972/1‑46 (MQ=255) gcagggCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:1869911/65‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:3431214/68‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:382670/68‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:1699392/68‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:3365176/68‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:628694/68‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:3064922/68‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:2661986/68‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:2857776/68‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:881042/68‑1 (MQ=255) cACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGta < 1:2700716/68‑1 (MQ=255) cGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGTATAg < 1:116296/69‑1 (MQ=255) | TCGATCAGTTTATTTTGCTGCCAGAAGGCATTAAACATTGGCATAGTGACGCGTTGCGCACGGGCACCTTTCTGAGCGGCATCATAGAAAAATTTCAGCCACGCCATTTCATCTTTACCTTCGGTATAG > minE/1259119‑1259247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |