| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,261,248 | A→C | 54.7% | T267T (ACT→ACG) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,261,248 | 0 | A | C | 54.7% | 24.3 / 61.7 | 64 | T267T (ACT→ACG) | torY | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| Reads supporting (aligned to +/- strand): ref base A (20/9); new base C (16/19); total (36/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.93e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
CGCACCCTGTAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGG > minE/1261182‑1261311 | cgcACCCTGTAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACa > 1:2369516/1‑67 (MQ=255)cgcACCCTGTAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACa > 1:791784/1‑67 (MQ=255)cgcACCCTGTAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACa > 1:2032751/1‑67 (MQ=255)cgcACCCTGTAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACa > 1:276717/1‑67 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGtta > 1:3142356/1‑65 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:3114910/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:2346837/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:2596878/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:2053444/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:2038844/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:2841494/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:2903465/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:3266343/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:94211/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:1551577/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:843111/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:1581600/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:552984/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAgc > 1:1313661/1‑69 (MQ=255) cccTGCAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGACATTCCCCGTTTACCGTTAgc > 1:2954618/1‑69 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:456220/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:992886/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:2515960/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:114443/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:594380/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:3426035/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:2970688/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:3003619/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:2595410/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:319700/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:2341238/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:1477306/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:2161419/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:209156/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:1557841/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:1627055/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:1715082/69‑1 (MQ=255) aaGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:1815366/69‑1 (MQ=255) aGACGCCTGACGCCATTGATTTCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCtt < 1:1700895/66‑1 (MQ=255) aGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACCGTTAGCGCCTTGa < 1:1161574/68‑1 (MQ=255) cGTCAGCCTGCCATTCCCCGTTTATAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAgcgc < 1:58798/67‑1 (MQ=255) cGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGAt < 1:1956490/40‑1 (MQ=255) cGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAgcgc < 1:2962006/67‑1 (MQ=255) cGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAgcgc < 1:1165893/67‑1 (MQ=255) cGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAgcgc < 1:305525/67‑1 (MQ=255) cGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAgcgc < 1:1674482/67‑1 (MQ=255) cGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAgcgc < 1:3254370/67‑1 (MQ=255) gTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGAt < 1:2780854/39‑1 (MQ=255) ccccGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTgcc > 1:2896253/1‑68 (MQ=255) ccccGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTgcc > 1:1765292/1‑68 (MQ=255) ccccGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTgcc > 1:1335475/1‑68 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:2367647/1‑54 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:2813184/1‑54 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:1253928/1‑54 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:1347984/1‑54 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:410120/1‑54 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:1518570/1‑54 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:2067235/1‑54 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:3216031/1‑54 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:2737631/1‑54 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAgg > 1:2458925/1‑67 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAgg > 1:715728/1‑67 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAgg > 1:788951/1‑67 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAgg > 1:1613777/1‑67 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAgg > 1:83845/1‑67 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAgg > 1:1697194/1‑67 (MQ=255) tACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAgg > 1:2763991/1‑67 (MQ=255) tACAGTGAGCGCCTTGATACCTTCCTCACTTAATGTGGCTAGCGCCAGCCGTTg > 1:1417562/1‑54 (MQ=255) | CGCACCCTGTAAAGACGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGG > minE/1261182‑1261311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |