| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,261,872 | C→T | 48.5% | S59S (TCG→TCA) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,261,872 | 0 | C | T | 48.5% | ‑2.5 / 27.7 | 35 | S59S (TCG→TCA) | torY | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| Reads supporting (aligned to +/- strand): ref base C (7/11); new base T (3/14); total (10/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-01 | |||||||||||
TCCCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAA > minE/1261817‑1261935 | tccCTGACTTTGGAATATGGCAATCTGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:3233063/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:1066898/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:1087820/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:758463/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:1258221/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:389285/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:3272367/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:1467106/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:3267129/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:3194867/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:1907099/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:2638125/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:2505744/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGaaaa < 1:2185875/61‑1 (MQ=255)tccCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAg < 1:1067027/69‑1 (MQ=255) tttGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGa < 1:2131264/69‑1 (MQ=255) tttGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGa < 1:3108296/69‑1 (MQ=255) tttGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGa < 1:1370891/69‑1 (MQ=255) tttGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGa < 1:552005/69‑1 (MQ=255) tttGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGa < 1:2421128/69‑1 (MQ=255) tttGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGa < 1:820544/69‑1 (MQ=255) tttGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGa < 1:2231342/69‑1 (MQ=255) gCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCaaa > 1:2328799/1‑69 (MQ=255) gCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCaaa > 1:445985/1‑69 (MQ=255) gCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCaaa > 1:2156267/1‑69 (MQ=255) gCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCaaa > 1:1602663/1‑69 (MQ=255) gCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCaaa > 1:310630/1‑69 (MQ=255) gCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCaa > 1:413721/1‑68 (MQ=255) cAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGAAAAGTGGACAGTTCCCTGATATTCCTCaaaa > 1:74659/1‑69 (MQ=255) cAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGAAAAGTGGACAGTTCCCTGATATTCCTCaaaa > 1:3037879/1‑69 (MQ=255) cAATCGGCACATTCCGCACGTATCCCTTTCTGGTTTGAAAAGTGGACAGTTCCCTGATATTCCTCaaaa > 1:1675060/1‑69 (MQ=255) cacaTTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTa < 1:2073317/68‑1 (MQ=255) cacaTTCCGCACGTATCCCTTTCTGGTGCGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTa < 1:2144864/68‑1 (MQ=255) ccGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCg < 1:1948354/69‑1 (MQ=255) cTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGc > 1:2951307/1‑68 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGTCAGGAAAGGCaa < 1:2243452/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:3059688/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:1526042/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:3399208/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:1366804/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:2767255/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:26837/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:736468/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:2048351/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:1136590/64‑1 (MQ=255) cGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCaa < 1:868952/64‑1 (MQ=255) | TCCCTGACTTTGGAATATGGCAATCGGCACATTCCGCACGTATCCCTTTCTGGTTCGAAAAGTGGACAGTTCCCTGATATTCCTCAAAAGGTTTACTCATCGAGTGGCAGGAAAGGCAA > minE/1261817‑1261935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |