Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,279,208 C→G 35.5% H329Q (CAC→CAG yeeJ → adhesin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,279,2080CG35.5% 22.0 / 22.0 31H329Q (CAC→CAGyeeJadhesin
Reads supporting (aligned to +/- strand):  ref base C (6/14);  new base G (9/2);  total (15/16)
Fisher's exact test for biased strand distribution p-value = 9.15e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01

ATGAAGCACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTAAACTGGTCTATGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAA  >  minE/1279144‑1279268
                                                                |                                                            
aTGAAGCACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTg                                                          >  1:2498701/1‑69 (MQ=255)
aTGAAGCACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTg                                                          >  1:1994122/1‑69 (MQ=255)
      cACGCCCTGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:3195472/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:3079171/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:3178636/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:1044041/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:2309720/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:434437/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:740351/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:1786963/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:1656299/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:1490463/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:1408253/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCCTGGCGGTa                                                    <  1:2420305/69‑1 (MQ=255)
      cACGCCCGGCCAATGGCTGGGATGTAAGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTa                                                    <  1:3160401/69‑1 (MQ=255)
               ccAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCgg                                                      >  1:833783/1‑58 (MQ=255)
               ccAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTAAACTGGTCt                                           >  1:78877/1‑69 (MQ=255)
                             gTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTAAACTGGTCTATGAACAGtattat                             >  1:2401024/1‑69 (MQ=255)
                             gTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTAAACTGGTCTATGAACAGtatta                              >  1:2509561/1‑68 (MQ=255)
                                              tttACCTGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCg                         <  1:2665779/54‑1 (MQ=255)
                                                tACCCGCCTGGCCGCACCTTGGCGGTAAACTGGTCTATGAACAGTATTATGGCGATGAAGTGGCCCTg           <  1:1130252/68‑1 (MQ=255)
                                                    tgCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCg                         <  1:1989603/49‑1 (MQ=255)
                                                         ggCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTaaa  >  1:3063262/1‑68 (MQ=255)
                                                         ggCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTaaa  >  1:3040986/1‑68 (MQ=255)
                                                         ggCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTaaa  >  1:3154212/1‑68 (MQ=255)
                                                         ggCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTaaa  >  1:3003956/1‑68 (MQ=255)
                                                         ggCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTaaa  >  1:2092435/1‑68 (MQ=255)
                                                         ggCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTaaa  >  1:50163/1‑68 (MQ=255)
                                                         ggCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTaaa  >  1:1980576/1‑68 (MQ=255)
                                                         ggCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTaaa  >  1:1811717/1‑68 (MQ=255)
                                                         ggCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTaaa  >  1:820397/1‑68 (MQ=255)
                                                                |                                                            
ATGAAGCACGCCCGGCCAATGGCTGGGATGTACGCGCAGAAAGCTGGCTACCCGCCTGGCCGCACCTTGGCGGTAAACTGGTCTATGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAA  >  minE/1279144‑1279268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: