| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,291,652 | A→G | 40.8% | G502G (GGT→GGC) | yeeO ← | predicted multidrug efflux system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,291,652 | 0 | A | G | 40.8% | 32.6 / 67.2 | 93 | G502G (GGT→GGC) | yeeO | predicted multidrug efflux system |
| Reads supporting (aligned to +/- strand): ref base A (9/46); new base G (26/12); total (35/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.45e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.35e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
AACCATTCGCCAGTAAAACAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACAA > minE/1291589‑1291709 | aaCCATTCGCCAGTAAAACAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACaccaac < 1:1222543/69‑1 (MQ=255)aaCCATTCGCCAGTAAAACAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACaccaac < 1:204847/69‑1 (MQ=255)aaCCATTCGCCAGTAAAACAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACaccaac < 1:1991512/69‑1 (MQ=255) aCCATTCGCCTGTAAAACATCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGAAaccaac < 1:6575/68‑1 (MQ=255) aaaaCAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCa > 1:2778840/1‑68 (MQ=255) aaaCAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAg < 1:840769/69‑1 (MQ=255) aaaCAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAg > 1:759945/1‑69 (MQ=255) aaaCAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAg > 1:668858/1‑69 (MQ=255) aaaCAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAg < 1:1193944/69‑1 (MQ=255) aaaCAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAg > 1:21049/1‑69 (MQ=255) aaaCAGCACGGCCCGCAAAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACCCCCCAGCCAAg > 1:308303/1‑69 (MQ=255) cAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCAt < 1:2518402/69‑1 (MQ=255) cAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCAt < 1:452258/69‑1 (MQ=255) cAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCAt < 1:647678/69‑1 (MQ=255) cAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCAt < 1:651575/69‑1 (MQ=255) cAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCAt < 1:753635/69‑1 (MQ=255) aGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCAt < 1:1989401/68‑1 (MQ=255) gCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACAAACCACACCCCAGCCAAGCATGATTccc > 1:2032030/1‑69 (MQ=255) gCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAg < 1:1698032/55‑1 (MQ=255) gCCCAGTCGGCAAACATTCCCATCCAGACaccaacc < 1:2464366/36‑1 (MQ=255) gCCCAGTCGGCAAACATTCCCATCCAGACaccaacc < 1:2887620/36‑1 (MQ=255) gCCCAGTCGGCAAACATTCCCATCCAGACaccaacc < 1:3398143/36‑1 (MQ=255) gCCCAGTCGGCAAACATTCCCATCCAGACaccaacc < 1:3405228/36‑1 (MQ=255) gCCCAGTCGGCAAACATTCCCATCCAGACaccaacc < 1:1057830/36‑1 (MQ=255) gCCCAGTCGGCAAACATTCCCATCCAGACaccaacc < 1:1098481/36‑1 (MQ=255) gCCCAGTCGGCAAACATTCCCATCCAGACaccaacc < 1:1788341/36‑1 (MQ=255) aaCATTCCCATCCAGACACCAACCACACCCCAGCCAAGCAt < 1:309172/41‑1 (MQ=255) aaCATTCCCATCCAGACACCAACCACACCCCAGCCAAGCAt < 1:87248/41‑1 (MQ=255) aaCATTCCCATCCAGACACCAACCACACCCCAGCCAAGCAt < 1:2792923/41‑1 (MQ=255) aCATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:2415598/69‑1 (MQ=255) aCATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:1014015/69‑1 (MQ=255) aCATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:814262/69‑1 (MQ=255) aCATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:1484209/69‑1 (MQ=255) aCATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:2815171/69‑1 (MQ=255) aCATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:2905945/69‑1 (MQ=255) aCATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:2051107/69‑1 (MQ=255) aCATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:1901819/69‑1 (MQ=255) aCATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:613600/69‑1 (MQ=255) cATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:1817636/68‑1 (MQ=255) cATTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:2482046/68‑1 (MQ=255) aTTCCCATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAAccc < 1:1282694/67‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATACCCGACTACAACCCGAc < 1:752819/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:232463/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:2016582/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:2971249/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:125398/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:1227996/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:906588/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:2899691/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:912156/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:1080414/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:445334/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:2300140/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:1553300/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:2308339/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:1700241/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCAGCCAAGAATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:40611/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCACCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:429051/69‑1 (MQ=255) ttCCCATCCAGACACCAACCACACCCCACCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGAc < 1:2332856/69‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:3263409/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:3251365/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:3314437/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:875817/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:3022658/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:2025575/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:2969812/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:1086573/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:1725817/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:2128692/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:224/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:2264385/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:2599809/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCg < 1:2558822/54‑1 (MQ=255) cccATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:3009759/1‑69 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGa > 1:1272454/1‑36 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTccc > 1:3078889/1‑41 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCa > 1:3397087/1‑42 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCTACTACAACCCGACaa > 1:1808491/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTAc > 1:1429001/1‑58 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:35895/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:2132802/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:848651/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:2666520/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:7602/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:2861041/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:2864017/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:1450617/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:2931323/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:2940728/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:1228685/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:62167/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:538684/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:522352/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:3337637/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:3370051/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:4075/1‑68 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACa > 1:255597/1‑67 (MQ=255) ccATCCAGACGCCAACCACACCCCAGCCAAGCATGATTCACAGCACATAACCGACTACAACCCGACaa > 1:1840290/1‑68 (MQ=255) ccATCCAGACGCCAAACACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACaa > 1:1076245/1‑68 (MQ=255) gACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATACCCg < 1:2089523/46‑1 (MQ=255) | AACCATTCGCCAGTAAAACAGCACGGCCCGCACAGCCCAGTCGGCAAACATTCCCATCCAGACACCAACCACACCCCAGCCAAGCATGATTCCCAGCACATAACCGACTACAACCCGACAA > minE/1291589‑1291709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |