| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 105,440 | C→T | 40.7% | V284V (GTG→GTA) | aroP ← | aromatic amino acid transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 105,440 | 0 | C | T | 40.7% | 34.8 / 55.6 | 81 | V284V (GTG→GTA) | aroP | aromatic amino acid transporter |
| Reads supporting (aligned to +/- strand): ref base C (28/20); new base T (14/19); total (42/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.08e-01 | |||||||||||
GCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAACGCG > minE/105374‑105502 | gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:3025389/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:929683/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:632637/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:898352/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:2556272/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:2694198/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:286494/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:2921027/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:3014553/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:1404736/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:3036499/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:3065982/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:131069/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:3100723/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:3107151/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:388002/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:961627/1‑68 (MQ=255)gCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCca > 1:873526/1‑68 (MQ=255) taCGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGt > 1:1743371/1‑69 (MQ=255) taCGCAGCTGTTGAACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGt > 1:2466896/1‑69 (MQ=255) cTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCt > 1:3073064/1‑69 (MQ=255) cTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCt < 1:647878/69‑1 (MQ=255) cTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCt < 1:2879870/69‑1 (MQ=255) cTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCt < 1:277597/69‑1 (MQ=255) cTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCt > 1:437566/1‑69 (MQ=255) cTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCt < 1:68098/69‑1 (MQ=255) cTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCt < 1:246815/69‑1 (MQ=255) cTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCt > 1:400112/1‑69 (MQ=255) gtACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTc > 1:193250/1‑69 (MQ=255) gtACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTc > 1:622499/1‑69 (MQ=255) cacGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGt > 1:701018/1‑68 (MQ=255) cacGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGt > 1:129150/1‑68 (MQ=255) cacGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGt > 1:385756/1‑68 (MQ=255) gagaGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAg < 1:475606/69‑1 (MQ=255) gagaGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAg < 1:247214/69‑1 (MQ=255) gagaGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAg < 1:951728/69‑1 (MQ=255) gagaGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAg < 1:2670169/69‑1 (MQ=255) gagaGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAg < 1:753271/69‑1 (MQ=255) tcagtACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg < 1:264130/69‑1 (MQ=255) tcagtACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg < 1:1393758/69‑1 (MQ=255) tcagtACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg < 1:1579403/69‑1 (MQ=255) tcagtACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg < 1:943426/69‑1 (MQ=255) agtACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACgg > 1:51502/1‑68 (MQ=255) agtACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACgg > 1:2435676/1‑68 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:2723403/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:955973/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:3027296/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:856920/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:727440/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:3308303/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:690573/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:2806274/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:509065/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:2678329/69‑1 (MQ=255) agtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:1903032/69‑1 (MQ=255) gtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:144113/68‑1 (MQ=255) gtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:1859849/68‑1 (MQ=255) gtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:2657395/68‑1 (MQ=255) gtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:2446022/68‑1 (MQ=255) gtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:947865/68‑1 (MQ=255) gtACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:634955/68‑1 (MQ=255) tACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:1021132/67‑1 (MQ=255) tACCACGATATTCAGCGCATTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGa < 1:3213252/67‑1 (MQ=255) ccACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTgg > 1:1318711/1‑69 (MQ=255) ccACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTgg > 1:3171769/1‑69 (MQ=255) ccACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTgg < 1:3036465/69‑1 (MQ=255) ccACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTgg < 1:704871/69‑1 (MQ=255) ccACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTgg > 1:2262138/1‑69 (MQ=255) ccACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTgg > 1:2412467/1‑69 (MQ=255) aCGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGt < 1:901042/68‑1 (MQ=255) aCGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGt < 1:609885/68‑1 (MQ=255) cGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGt < 1:1938954/67‑1 (MQ=255) gTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAg < 1:2224287/43‑1 (MQ=255) cAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGa > 1:867566/1‑38 (MQ=255) cAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg > 1:2678768/1‑53 (MQ=255) cAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg > 1:2803007/1‑53 (MQ=255) cAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg > 1:2818172/1‑53 (MQ=255) cAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg > 1:154010/1‑53 (MQ=255) cAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg > 1:1503405/1‑53 (MQ=255) cAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACg > 1:1205082/1‑53 (MQ=255) cATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGa > 1:2162285/1‑36 (MQ=255) cATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGa > 1:1694888/1‑36 (MQ=255) cATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGa > 1:1541600/1‑36 (MQ=255) cATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGa > 1:2861656/1‑36 (MQ=255) cATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGa > 1:3408494/1‑36 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGAt > 1:859771/1‑36 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTACcgcc > 1:343780/1‑68 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgcg > 1:987883/1‑69 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgcg > 1:62213/1‑69 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgcg > 1:2073784/1‑69 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgcg > 1:1852318/1‑69 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgcg > 1:1786423/1‑69 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgcg > 1:1303734/1‑69 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgcg > 1:1134778/1‑69 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgcg > 1:1034910/1‑69 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgc > 1:861319/1‑68 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcgc > 1:877011/1‑68 (MQ=255) aTTCGCTACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAAcg > 1:3306112/1‑67 (MQ=255) aTTCGCTACAAAGGTATCCCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATcggcg > 1:1625505/1‑61 (MQ=255) | GCAATATACGCAGCTGTTGTACACGGAGAGCGCCGCAGTCAGTACCACGATGTTCAGCGCATTCGCCACAAAGGTATCGCCTAACTCGTGGAAGATCAGCACAAACGGACTGGTATCGGCGGTAACGCG > minE/105374‑105502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |