Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,336,543 A→G 32.7% T126T (ACT→ACC gmd ← GDP‑D‑mannose dehydratase, NAD(P)‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,336,5430AG32.7% 48.2 / 32.4 64T126T (ACT→ACCgmdGDP‑D‑mannose dehydratase, NAD(P)‑binding
Reads supporting (aligned to +/- strand):  ref base A (27/16);  new base G (13/8);  total (40/24)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGA  >  minE/1336489‑1336607
                                                      |                                                                
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCa                                                     >  1:3207854/1‑68 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:1386301/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:2098260/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:618168/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:541717/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:343573/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:3413038/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:3394482/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:2610666/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:818721/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:1268126/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAg                                                    >  1:916488/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTATTTTCCAg                                                    >  1:2670077/1‑69 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:3275044/55‑1 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:522220/55‑1 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:2617225/55‑1 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:262926/55‑1 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:604137/55‑1 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:2718904/55‑1 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:2973951/55‑1 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:621964/55‑1 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:1066147/55‑1 (MQ=255)
cGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGa                                                                  <  1:1804268/55‑1 (MQ=255)
       tCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCcagacaga                                               >  1:143084/1‑67 (MQ=255)
       tCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGa                                               >  1:2296820/1‑67 (MQ=255)
       tCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGa                                               >  1:18335/1‑67 (MQ=255)
       tCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGa                                               >  1:3292932/1‑67 (MQ=255)
       tCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGa                                               >  1:2096032/1‑67 (MQ=255)
       tCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGa                                               >  1:3150901/1‑67 (MQ=255)
       tCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGa                                               >  1:3264417/1‑67 (MQ=255)
       tCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGa                                               >  1:699259/1‑67 (MQ=255)
               cAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAGACCGAGGAAGCGGAt                                     <  1:450914/69‑1 (MQ=255)
               cAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAGACCGAGGAAGCGGAt                                     <  1:709020/69‑1 (MQ=255)
               cAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAGACCGAGGAAGCGGAt                                     <  1:2981961/69‑1 (MQ=255)
               cAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAGACCGAGGAAGCGGAt                                     <  1:3027138/69‑1 (MQ=255)
               cAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAGACCGAGGAAGCGGAt                                     <  1:712933/69‑1 (MQ=255)
               cAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAGACCGAGGAAGCGGAt                                     <  1:1047191/69‑1 (MQ=255)
               cAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAGACCGAGGAAGCGGAt                                     <  1:3231928/69‑1 (MQ=255)
               cAGACCGTACAGTTCAGAAGTAGAAGCCTGATAGAAACGGGTTTTCTTTTCCAGACCGAGGAAGCGGAt                                     <  1:1235791/69‑1 (MQ=255)
                    cATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGcc                                 >  1:1374276/1‑68 (MQ=255)
                    cATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGcc                                 >  1:734163/1‑68 (MQ=255)
                    cATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGcc                                 >  1:2244345/1‑68 (MQ=255)
                    cATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGcc                                 >  1:2621648/1‑68 (MQ=255)
                    cATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGcc                                 >  1:252337/1‑68 (MQ=255)
                        cAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTcc                              >  1:1042796/1‑67 (MQ=255)
                        cAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTcc                              >  1:939734/1‑67 (MQ=255)
                        cAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTcc                              >  1:1346965/1‑67 (MQ=255)
                        cAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTcc                              >  1:2784155/1‑67 (MQ=255)
                        cAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTcc                              >  1:2159270/1‑67 (MQ=255)
                            tCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGc                                  >  1:355324/1‑59 (MQ=255)
                                  gTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAg                   >  1:1214560/1‑68 (MQ=255)
                                  gTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAg                   >  1:2891406/1‑68 (MQ=255)
                                  gTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAg                   >  1:1302310/1‑68 (MQ=255)
                                  gTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAg                   >  1:292307/1‑68 (MQ=255)
                                   tGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCg                 <  1:423607/69‑1 (MQ=255)
                                   tGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCg                 <  1:1038460/69‑1 (MQ=255)
                                   tGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCg                 <  1:3252045/69‑1 (MQ=255)
                                    ggAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCg                 <  1:2059708/68‑1 (MQ=255)
                                    ggAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGt                >  1:2463566/1‑69 (MQ=255)
                                     gAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTa               <  1:692825/69‑1 (MQ=255)
                                     gAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTa               <  1:688904/69‑1 (MQ=255)
                                     gAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGAAGCGTa               <  1:442833/69‑1 (MQ=255)
                                       aGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTa               <  1:2705623/67‑1 (MQ=255)
                                                gAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTc    <  1:1989788/69‑1 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  <  1:3172341/69‑1 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  <  1:210278/69‑1 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  <  1:1678435/69‑1 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  >  1:577302/1‑69 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  <  1:530649/69‑1 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  >  1:3234115/1‑69 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  <  1:349642/69‑1 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  >  1:2437731/1‑69 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  <  1:2919738/69‑1 (MQ=255)
                                                  aaCGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGa  <  1:3389183/69‑1 (MQ=255)
                                                      aGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAcc             >  1:2869921/1‑54 (MQ=255)
                                                      aGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAcc             >  1:2142498/1‑54 (MQ=255)
                                                      aGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAcc             >  1:897699/1‑54 (MQ=255)
                                                      aGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAcc             >  1:2920851/1‑54 (MQ=255)
                                                      aGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAcc             >  1:2137850/1‑54 (MQ=255)
                                                      aGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAcc             >  1:2625830/1‑54 (MQ=255)
                                                      aGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAcc             >  1:2273332/1‑54 (MQ=255)
                                                      aGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAcc             >  1:2543545/1‑54 (MQ=255)
                                                      aGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAca             >  1:409173/1‑53 (MQ=255)
                                                      aGTTTTCTTTTCCACACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTAc              >  1:197034/1‑53 (MQ=255)
                                                      aGTTTTCTTTTCAAGACCGAGGAAGCGGATCGCCTCGAGCAGGCGCAGCGTAc              >  1:2518298/1‑53 (MQ=255)
                                                      |                                                                
CGGAATTTCCTGCACCAGACCATACAGTTCAGAGGTGGAAGCCTGATAGAAACGAGTTTTCTTTTCCAGACCGAGGAAGCGGATCGCCTCCAGCAGGCGCAGCGTACCCATCGCGTCGA  >  minE/1336489‑1336607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: