Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,339,872 C→T 25.1% G269S (GGC→AGC)  wcaC ← predicted glycosyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,339,8720CT25.1% 129.2 / 34.6 103G269S (GGC→AGC) wcaCpredicted glycosyl transferase
Reads supporting (aligned to +/- strand):  ref base C (28/49);  new base T (9/17);  total (37/66)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 103 total aligned reads displayed.

ATTAACCACGTTGCCAGCGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATGC  >  minE/1339807‑1339933
                                                                 |                                                             
aTTAACCACGTTGCCAGCGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCa                                                             >  1:1224751/1‑68 (MQ=255)
aTTAACCACGTTGCCAGCGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAg                                                            >  1:1586361/1‑69 (MQ=255)
aTTAACAACGTTGCCAGCGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAg                                                            >  1:443180/1‑69 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:1413812/69‑1 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:1649917/69‑1 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:2771869/69‑1 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:2885540/69‑1 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:2693189/69‑1 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:1492647/69‑1 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:2368874/69‑1 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:811581/69‑1 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:1194619/69‑1 (MQ=255)
                 cGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTa                                           <  1:232310/69‑1 (MQ=255)
                     gAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAg                                       >  1:3328843/1‑69 (MQ=255)
                     gAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAg                                       >  1:1514855/1‑69 (MQ=255)
                     gAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAg                                       >  1:2710428/1‑69 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:2125855/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:2409273/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:2966518/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:2526104/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:215852/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:2600901/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:2342415/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:2744914/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:1615416/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:3162967/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:3372693/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:446969/68‑1 (MQ=255)
                        cGGCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:1011143/68‑1 (MQ=255)
                         ggCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGtt                                     <  1:2865821/67‑1 (MQ=255)
                          gCGAGAACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACGAGtt                                     <  1:2686486/66‑1 (MQ=255)
                          gCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGt                                            >  1:2027649/1‑59 (MQ=255)
                              gaACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGTTGCTGCtt                              >  1:968607/1‑69 (MQ=255)
                              gaACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGTTGCTGCtt                              >  1:3000634/1‑69 (MQ=255)
                              gaACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGTTGCTGCtt                              >  1:3065182/1‑69 (MQ=255)
                              gaACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGTTGCTGCtt                              >  1:502891/1‑69 (MQ=255)
                              gaACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGTTGCTGCtt                              >  1:566260/1‑69 (MQ=255)
                              gaACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGTTGCTGCtt                              >  1:87173/1‑69 (MQ=255)
                              gaACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGTTGCTGCtt                              >  1:1255864/1‑69 (MQ=255)
                              gaACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCACCAGTTGCTGCtt                              >  1:2090680/1‑69 (MQ=255)
                              gaACTTACCGAAAGTATGCAGTTCGATTTTGTCGCTCAGCGCCATCATCTCGCGCAACAGTTGCTGCtt                              >  1:2306874/1‑69 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:2269770/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:652391/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:360453/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:1488525/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:1879665/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:1730500/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:1718869/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:3026953/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:3023344/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcgtcgt                <  1:1610238/69‑1 (MQ=255)
                                            tATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCcggcgt                <  1:1315875/69‑1 (MQ=255)
                                              tGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAg                                       >  1:728492/1‑44 (MQ=255)
                                              tGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:118026/1‑69 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCTTCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:1410680/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCTTCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:3116243/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:1597128/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:682053/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:729092/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:3241930/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:3093686/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:1494856/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:3294567/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:3358056/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:3371830/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:2933027/1‑67 (MQ=255)
                                                cAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTaa              >  1:836992/1‑67 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:1344771/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:3356250/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:588905/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:237388/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:559980/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:3160841/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:1680129/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:739413/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:1221119/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:1671549/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:2956296/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:858127/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:2861006/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGAt       <  1:2773301/69‑1 (MQ=255)
                                                     cAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCCTAACGCAGAt       <  1:2308262/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgg  <  1:1196142/69‑2 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:2347374/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  >  1:2814297/1‑69 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:1614919/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:1611016/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  >  1:817145/1‑69 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:2994940/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  >  1:2750486/1‑69 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:2618481/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  >  1:1350819/1‑69 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:713516/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:688793/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:3166772/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:2195308/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:1393439/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  <  1:3386853/69‑1 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  >  1:1974209/1‑69 (MQ=255)
                                                          ttGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATgc  >  1:2075001/1‑69 (MQ=255)
                                                                 |                                                             
ATTAACCACGTTGCCAGCGGTGAACGGCGAGAACTTACCAAAGGTATGCAGTTCAATTTTGTCGCCCAGCGCCATCATCTCGCGTACCAGTTGCTGGTTAGTTTTGCCGTCGTAACGCAGATCATGC  >  minE/1339807‑1339933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: