| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,344,420 | C→A | 43.5% | P95P (CCG→CCT) | wzb ← | protein‑tyrosine phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,344,420 | 0 | C | A | 43.5% | 52.7 / 97.1 | 101 | P95P (CCG→CCT) | wzb | protein‑tyrosine phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (11/46); new base A (22/22); total (33/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.40e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 104 total aligned reads displayed.
GATACGGATCGGGGATTTCACATTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTA > minE/1344353‑1344479 | gATACGGATCGGGGATTTCACATTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTcc < 1:1152519/68‑1 (MQ=255)gATACGGATCGGGGATTTCACATTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTcc < 1:2385612/68‑1 (MQ=255) aTACGGATCGGGGATTTCACATTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTcc < 1:2087488/67‑1 (MQ=255) caTTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCg < 1:1445926/68‑1 (MQ=255) caTTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCg < 1:1554264/68‑1 (MQ=255) caTTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCg < 1:1886247/68‑1 (MQ=255) caTTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCg < 1:2728514/68‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTcta < 1:2776469/69‑3 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:3345696/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2098435/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2788875/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:1781424/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:1007533/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:1887940/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2366757/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2362377/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:1986372/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2255819/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:97795/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:1400570/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:982915/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:799431/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:890074/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:838841/69‑1 (MQ=255) cGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:1336424/69‑1 (MQ=255) ttATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGat < 1:2109968/68‑1 (MQ=255) ttATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGat < 1:952737/68‑1 (MQ=255) ttATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGat < 1:1189984/68‑1 (MQ=255) ttATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGat < 1:3395620/68‑1 (MQ=255) ttATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGat < 1:1639082/68‑1 (MQ=255) ttATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGat < 1:3413507/68‑1 (MQ=255) aTCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATg > 1:1906949/1‑69 (MQ=255) aGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGgcgc < 1:2653331/68‑1 (MQ=255) aGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGgcgc < 1:2693531/68‑1 (MQ=255) aGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGgcgc < 1:3041666/68‑1 (MQ=255) aCCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTc > 1:108918/1‑69 (MQ=255) aCCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTc > 1:2375498/1‑69 (MQ=255) aCCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTc > 1:939128/1‑69 (MQ=255) aCCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTc > 1:1357700/1‑69 (MQ=255) aCCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTc > 1:2387856/1‑69 (MQ=255) aCCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTc > 1:1389917/1‑69 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAg > 1:2374241/1‑43 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGgcg > 1:2111118/1‑57 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:2981547/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1110411/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1145249/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1164123/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:906636/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1241400/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1265498/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:642219/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:555262/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:477578/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1504531/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1551623/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:2986738/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:2053595/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1552188/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1856300/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:2025273/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:2453275/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:1759232/1‑68 (MQ=255) cAGCATCACTTTGCCGCGCATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATgg > 1:2392200/1‑68 (MQ=255) tCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCaaa > 1:2703126/1‑68 (MQ=255) tCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCaaa > 1:2122798/1‑68 (MQ=255) tCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCaaa > 1:3238232/1‑68 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2566610/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:645479/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:1382327/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:1977607/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:324063/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:3211359/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2388548/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:915395/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2136068/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:1731434/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2665666/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:175446/43‑1 (MQ=255) aCTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGa < 1:2477704/43‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:2177255/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:965556/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:1978018/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:808164/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:754994/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:1086070/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:1861024/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:625958/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:615514/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:2382791/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:454914/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:1497052/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:182337/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:3361908/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:152486/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:2975074/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:2785739/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:163889/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:275928/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:1668217/69‑1 (MQ=255) gcgcATCTCAGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTa < 1:25964/69‑1 (MQ=255) | GATACGGATCGGGGATTTCACATTCGTTATCCCAGTGACCAAACAGCATCACTTTGCCGCGCATCTCCGGTGCCATCTCGCATAAGCGTTCGATATGGCGCTTTTCCATGGTCAAAATCAGGTCGTA > minE/1344353‑1344479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |