| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,356,788 | G→A | 41.1% | G778G (GGC→GGT) | yehB ← | predicted outer membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,356,788 | 0 | G | A | 41.1% | 51.8 / 84.1 | 119 | G778G (GGC→GGT) | yehB | predicted outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (59/11); new base A (24/25); total (83/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.43e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 119 total aligned reads displayed.
GCCACATTAACCGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGCTC > minE/1356723‑1356852 | gCCACATTAACCGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGcc > 1:2305260/1‑68 (MQ=255)gCCACATTAACCGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGcc > 1:3141242/1‑68 (MQ=255)gCCACATTAACCGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGcc > 1:1901040/1‑68 (MQ=255)gCCACATTAACCGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGcc > 1:1245179/1‑68 (MQ=255)gCCACATTAACCGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGcc > 1:1221167/1‑68 (MQ=255)gCCACATTAACCGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGcc > 1:1196243/1‑68 (MQ=255)gCCACATTAACCGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGcc > 1:2194755/1‑68 (MQ=255)gCCACATTAACCGATGGCGGTAATTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGcc > 1:1080600/1‑68 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:764061/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc < 1:3098399/69‑1 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc < 1:1840741/69‑1 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:3198238/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:2956026/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:3361085/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:1506661/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:1912687/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:2693085/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:2659810/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:2638099/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:804839/1‑69 (MQ=255) cGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGAcc > 1:2569197/1‑69 (MQ=255) aCTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCa > 1:1878420/1‑69 (MQ=255) aCTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCa > 1:1617332/1‑69 (MQ=255) aCTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCa > 1:315718/1‑69 (MQ=255) aCTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCa > 1:465554/1‑69 (MQ=255) aCTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCa > 1:3152147/1‑69 (MQ=255) cTTCATTGGTGCTAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:539308/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGAGAACACCAATATTATGACCATGGATATCa > 1:3073885/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:2599338/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:3348389/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:3351704/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:2945617/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:423863/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:47849/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:636197/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:696276/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:740612/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:2527842/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:850853/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:874709/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:1097336/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:222785/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:1165359/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:1392046/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:2104761/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:1535949/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:2086121/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:2066708/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:1974189/47‑1 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATc > 1:784994/1‑67 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATc > 1:1711695/1‑67 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:3075841/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:3227897/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:1569791/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:2270864/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:1531107/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:15306/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:348941/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:1411655/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:623078/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:635818/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:1308377/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:2490050/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:1876992/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:2674093/1‑68 (MQ=255) cTTCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCAATATTATGACCATGGATATCa > 1:2902950/1‑68 (MQ=255) ttCATTGGTGCGAATAAATAACTGGCTTCCCTGGCCGACAACACCa < 1:2472329/46‑1 (MQ=255) cGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCAtt > 1:1160694/1‑59 (MQ=255) cGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCAtt > 1:2785965/1‑59 (MQ=255) cGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCAtt > 1:2469854/1‑59 (MQ=255) taaataaCTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGatat > 1:3306812/1‑51 (MQ=255) taaataaCTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGatat > 1:408426/1‑51 (MQ=255) taaataaCTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGatat > 1:2684454/1‑51 (MQ=255) taaataaCTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGatat > 1:3255215/1‑51 (MQ=255) taaataaCTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGatat > 1:1895138/1‑51 (MQ=255) taaataaCTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGatat > 1:1112243/1‑51 (MQ=255) aaataaCTGACTTCCCTGGCCGACAACGCCAatat < 1:2099650/35‑1 (MQ=255) tGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAAt < 1:2463426/69‑1 (MQ=255) cTGGCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGcc < 1:1167134/68‑1 (MQ=255) cTGGCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGcc < 1:45735/68‑1 (MQ=255) tGGCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGccc < 1:3378849/68‑1 (MQ=255) gCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATc > 1:635121/1‑69 (MQ=255) gCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATc > 1:573176/1‑69 (MQ=255) gCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATc > 1:215638/1‑69 (MQ=255) gCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATc > 1:2477098/1‑69 (MQ=255) gCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATc > 1:1833499/1‑69 (MQ=255) cGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTg < 1:801639/69‑1 (MQ=255) cGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTg < 1:2272797/69‑1 (MQ=255) cGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTg < 1:3091515/69‑1 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGt > 1:1765405/1‑48 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:1453885/1‑68 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:1314945/1‑68 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:673897/1‑68 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:1459354/1‑68 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:69794/1‑68 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:2629545/1‑68 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:3259983/1‑68 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:1639870/1‑68 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:1752191/1‑68 (MQ=255) aaCGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGctc > 1:2958873/1‑68 (MQ=255) | GCCACATTAACCGATGGCGGTACTTCATTGGTGCGAATAAATAACTGACTTCCCTGGCCGACAACGCCAATATTATGACCATGGATATCATTGACTTCATAACCAAACGTTAATGATTGCCCATCTGCTC > minE/1356723‑1356852 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |