| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,357,334 | T→G | 30.2% | T596T (ACA→ACC) | yehB ← | predicted outer membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,357,334 | 0 | T | G | 30.2% | 63.7 / 41.1 | 63 | T596T (ACA→ACC) | yehB | predicted outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (35/9); new base G (10/9); total (45/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.83e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 | |||||||||||
TTCATTTCCCTGATGTTGATGACTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACATA > minE/1357271‑1357400 | ttCATTTCCCTGATACTGATAACTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTc < 1:288081/68‑1 (MQ=255)ttCATTTCCCTGATACTGATAACTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTc < 1:2359727/68‑1 (MQ=255)ttCATTTCCCTGATACTGATAACTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTc < 1:2590596/68‑1 (MQ=255)ttCATTTCCCTGATACTGATAACTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTc < 1:1815913/68‑1 (MQ=255)ttCATTTCCCTGATACTGATAACTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTc < 1:1693352/68‑1 (MQ=255)ttCATTTCCCTGATACTGATAACTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTc < 1:3241475/68‑1 (MQ=255)ttCATTTCCCTGATACTGATAACTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTc < 1:3132825/68‑1 (MQ=255)ttCATTTCCCTGATACTGATAACTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTc < 1:1253966/68‑1 (MQ=255)ttCATTTCCCTGATACTGATAACTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTc < 1:3219998/68‑1 (MQ=255) ttCCCTGATGTTGATGACTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGAt < 1:2454205/68‑1 (MQ=255) cTGATGTTGATGACTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGAt < 1:2308505/64‑1 (MQ=255) gatgaCTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGtatta > 1:902569/1‑68 (MQ=255) gatgaCTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGtatta > 1:1990382/1‑68 (MQ=255) gatgaCTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGtatta > 1:512350/1‑68 (MQ=255) gatgaCTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGtat < 1:1169715/66‑1 (MQ=255) gatgaCTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTACTGATAATCCCGtattat > 1:323929/1‑69 (MQ=255) gatgaCTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTACTGATAATCCCGtattat > 1:319813/1‑69 (MQ=255) aCTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGa > 1:1579032/1‑69 (MQ=255) aCTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGa > 1:1478538/1‑69 (MQ=255) aCTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGa > 1:393037/1‑69 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTCCTGa > 1:1550407/1‑50 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTCCTGa > 1:3185353/1‑50 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTCCTGa > 1:2634376/1‑50 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTCCTGa > 1:1059712/1‑50 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTCCTGa > 1:492450/1‑50 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTCCTGa > 1:302800/1‑50 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTCCTGa > 1:398085/1‑50 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTCCTGa > 1:2170915/1‑50 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCGGCTTCCAACGGTTCCTGa > 1:1409225/1‑50 (MQ=255) cTCAGGTTGACCCCATAGTTAAACTGATCCCAGCTTCCAACGGTTCCTGa > 1:1003170/1‑50 (MQ=255) gTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCa < 1:701398/67‑1 (MQ=255) gTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCa < 1:471382/67‑1 (MQ=255) gTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCa < 1:367024/67‑1 (MQ=255) gTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCa < 1:1352351/67‑1 (MQ=255) gTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCa < 1:2961393/67‑1 (MQ=255) gACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAAccc < 1:1328473/69‑1 (MQ=255) aTAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGatc > 1:2083462/1‑69 (MQ=255) aTAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGatc > 1:31258/1‑69 (MQ=255) aTAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGatc > 1:537410/1‑69 (MQ=255) aTAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGatc > 1:2201617/1‑69 (MQ=255) aTTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGatcat > 1:1074891/1‑68 (MQ=255) cccTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTa > 1:640107/1‑67 (MQ=255) cccTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTa > 1:1422133/1‑67 (MQ=255) cccTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTa > 1:3245179/1‑67 (MQ=255) cccTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTa > 1:2762344/1‑67 (MQ=255) cccTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTa > 1:1806605/1‑67 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACata > 1:1005054/1‑69 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACata > 1:1149555/1‑69 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACat > 1:3082103/1‑68 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACat > 1:2855769/1‑68 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACat > 1:3311876/1‑68 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACat > 1:2100623/1‑68 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACat > 1:1039415/1‑68 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACa > 1:2966391/1‑67 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACa > 1:1623427/1‑67 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACa > 1:1573178/1‑67 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACa > 1:1480487/1‑67 (MQ=255) aCTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACa > 1:862111/1‑67 (MQ=255) cTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGAtcatca > 1:3189053/1‑47 (MQ=255) cTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGAtcatca > 1:2523020/1‑47 (MQ=255) cTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGAtcatca > 1:1826524/1‑47 (MQ=255) cTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACata > 1:2616201/1‑68 (MQ=255) cTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACata > 1:2082254/1‑68 (MQ=255) | TTCATTTCCCTGATGTTGATGACTCAGGTTGACACCATAATTGAACTGATCCCGACTCCCTACTGTTCCTGATAATCCCGTATTATTTGAGGCAAACCCCTGATCATCAAACGTCGTTGAGTTAGACATA > minE/1357271‑1357400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |