| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,357,628 | A→G | 64.8% | G498G (GGT→GGC) | yehB ← | predicted outer membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,357,628 | 0 | A | G | 64.8% | 21.0 / 15.6 | 34 | G498G (GGT→GGC) | yehB | predicted outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (8/4); new base G (12/10); total (20/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGCCGCTACGCCCCCAGTAATCTCGCCATAACGTACTTAATGACACAGACCCCCAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGCCAAAATCGTTCTGGT > minE/1357572‑1357692 | ctGCCGCTACGCCCCCAGTAATCTCGCCATAACGTACTTAATGACACAGACCCCCAACCTTCTGGCAAt > 1:1223292/1‑69 (MQ=255) aCGTACTTAATGACACAGACCCCCAACCTTCTGGCAATGACTgg > 1:2530222/1‑44 (MQ=255) aCGTACTTAATGACACAGACCCCCAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTAtttt > 1:3389586/1‑69 (MQ=255) aCGTACTTAATGACACAGACCCCCAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTAtttt > 1:1885812/1‑69 (MQ=255) gTACTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:115224/68‑1 (MQ=255) gTACTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:2927100/68‑1 (MQ=255) gTACTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:3115287/68‑1 (MQ=255) gTACTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:3196040/68‑1 (MQ=255) gTACTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:2499152/68‑1 (MQ=255) gTACTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:2241261/68‑1 (MQ=255) gTACTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:831685/68‑1 (MQ=255) gTACTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:1286219/68‑1 (MQ=255) tACTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:3090883/67‑1 (MQ=255) aCTTAAGGACACAGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTAttttt < 1:466182/66‑1 (MQ=255) tAATGACACAGACCCCCAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGc > 1:2151817/1‑68 (MQ=255) tAATGACACAGACCCCCAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGc > 1:3221267/1‑68 (MQ=255) tAATGACACAGACCCCCAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGc > 1:1118018/1‑68 (MQ=255) cacaGAACCCCAGGCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:546988/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGaaa > 1:853398/1‑47 (MQ=25) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:2997955/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:2911088/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:2696574/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:2695743/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:3244417/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:3355810/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:2546857/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:2239027/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:1578874/1‑69 (MQ=255) cacaGAACCCCAGCCTTCTGGCAATGACTGACTCATATTGGCAGAAAAGCTATTTTTACGGCCAAAATc > 1:1505019/1‑69 (MQ=255) acaGACCCCCAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGCCAAAATCg > 1:1517152/1‑69 (MQ=255) cccAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGCCAAAATCGTTCTGGt < 1:2919100/69‑1 (MQ=255) cccAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGCCAAAATCGTTCTGGt < 1:2547312/69‑1 (MQ=255) cccAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGCCAAAATCGTTCTGGt < 1:482071/69‑1 (MQ=255) cccAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGCCAAAATCGTTCTGGt < 1:839273/69‑1 (MQ=255) | CTGCCGCTACGCCCCCAGTAATCTCGCCATAACGTACTTAATGACACAGACCCCCAACCTTCTGGCAATGACTGGCTCATATTGGCGGAAAAGCTATTTTTGCGGCCAAAATCGTTCTGGT > minE/1357572‑1357692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |