| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,371,319 | G→T | 30.1% | L149L (CTG→CTT) | cdd → | cytidine/deoxycytidine deaminase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,371,319 | 0 | G | T | 30.1% | 69.9 / 28.3 | 53 | L149L (CTG→CTT) | cdd | cytidine/deoxycytidine deaminase |
| Reads supporting (aligned to +/- strand): ref base G (26/11); new base T (8/8); total (34/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCTTGTGGTCACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTG > minE/1371253‑1371382 | gCCTTGTGGTCACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGcc > 1:1249508/1‑69 (MQ=255)gCCTTGTGGTCACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGc > 1:2637934/1‑68 (MQ=255) cACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGa > 1:2021095/1‑68 (MQ=255) cACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGa > 1:394804/1‑68 (MQ=255) cACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGa > 1:237727/1‑68 (MQ=255) cACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGa > 1:3189283/1‑68 (MQ=255) cACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGa > 1:2964917/1‑68 (MQ=255) cACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGa > 1:2121725/1‑68 (MQ=255) cACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGa > 1:1460910/1‑68 (MQ=255) cACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGa > 1:124764/1‑68 (MQ=255) cACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGa > 1:2789765/1‑68 (MQ=255) tGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGca < 1:1933089/69‑1 (MQ=255) accGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGcac < 1:1206842/68‑1 (MQ=255) ccGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGcaca > 1:2954334/1‑69 (MQ=255) ccGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGcaca > 1:3274045/1‑69 (MQ=255) ccGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGcaca > 1:413956/1‑69 (MQ=255) aGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACAcgcg > 1:3223052/1‑68 (MQ=255) aGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACgcgc > 1:22437/1‑69 (MQ=255) aGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACgcgc > 1:988578/1‑69 (MQ=255) ttATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGc > 1:2543153/1‑69 (MQ=255) ttATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGc > 1:2662391/1‑69 (MQ=255) ttATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGc > 1:2856219/1‑69 (MQ=255) ttATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGc > 1:3234174/1‑69 (MQ=255) ttATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGc > 1:1888161/1‑69 (MQ=255) ttATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGc > 1:642256/1‑69 (MQ=255) ttATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGc > 1:68303/1‑69 (MQ=255) tATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGc > 1:1017094/1‑68 (MQ=255) cAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCa < 1:1528345/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:410967/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:447380/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:940694/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:108341/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:2759026/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:2243955/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:1813608/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:1626343/67‑1 (MQ=255) tGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGcc > 1:2176163/1‑67 (MQ=255) aTTCATCTGTCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:64799/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:2478277/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:2063675/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:355729/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:1961022/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:948735/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:1251363/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:811982/69‑1 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCtttc > 1:351830/1‑53 (MQ=37) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTg > 1:663541/1‑54 (MQ=37) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGATAGAtgaa > 1:2598403/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGAtgaa > 1:802633/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGAtgaa > 1:1705631/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGAtgaa > 1:1957893/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGAtgaa > 1:1168612/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATATACCGGATg > 1:1541863/1‑48 (MQ=21) | GCCTTGTGGTCACTGCCGTCAGTTTATGAATGAACTGAACAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTG > minE/1371253‑1371382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |