| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,371,358 | A→G | 40.9% | P162P (CCA→CCG) | cdd → | cytidine/deoxycytidine deaminase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,371,358 | 0 | A | G | 40.9% | 21.9 / 47.7 | 66 | P162P (CCA→CCG) | cdd | cytidine/deoxycytidine deaminase |
| Reads supporting (aligned to +/- strand): ref base A (3/36); new base G (18/9); total (21/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGAACAGGATCACGGCTA > minE/1371292‑1371423 | cAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCa < 1:1528345/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:2759026/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:1813608/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:1626343/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:2243955/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:108341/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:410967/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:447380/67‑1 (MQ=255) tCTGCGTATTCATCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:940694/67‑1 (MQ=255) tGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGcc > 1:2176163/1‑67 (MQ=255) aTTCATCTGTCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:64799/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:355729/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:2478277/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:811982/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:2063675/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:1961022/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:948735/69‑1 (MQ=255) aTTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGAt < 1:1251363/69‑1 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCtttc > 1:351830/1‑53 (MQ=37) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTg > 1:663541/1‑54 (MQ=37) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGATAGAtgaa > 1:2598403/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGAtgaa > 1:1168612/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGAtgaa > 1:1957893/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGAtgaa > 1:1705631/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGAtgaa > 1:802633/1‑65 (MQ=255) aTCTTCCGGGACGCGAGGCACACGCGCTGCGTGACTATATACCGGATg > 1:1541863/1‑48 (MQ=21) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCTGAAAGATCTGGAGATTaa < 1:702012/69‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTaa < 1:1791553/69‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTaa < 1:604470/69‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTaa < 1:548019/69‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTaa < 1:2486332/69‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTaa < 1:139283/69‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTaa < 1:1996308/69‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTaa < 1:822774/69‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTa < 1:1305727/68‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTa < 1:2075436/68‑1 (MQ=255) gggCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTa < 1:2617811/68‑1 (MQ=255) gcgAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgc < 1:530137/69‑1 (MQ=255) ggCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgctgct < 1:2688929/69‑1 (MQ=255) ggCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgctgct < 1:1324554/69‑1 (MQ=255) ggCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgctgct < 1:526229/69‑1 (MQ=255) ggCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgctgct < 1:3029397/69‑1 (MQ=255) ggCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgctgct < 1:584926/69‑1 (MQ=255) gCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgctgct < 1:1920295/68‑1 (MQ=255) cacGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgctgct < 1:3431951/65‑1 (MQ=255) acGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgctgct < 1:1883786/64‑1 (MQ=255) acGCGCTGCGTGACTATCTACCGGATGCCTTTggg < 1:2629177/35‑1 (MQ=37) cgcgCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:3283735/1‑68 (MQ=255) cgcgCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:2428182/1‑68 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACg > 1:3237705/1‑58 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:1152567/1‑68 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:1723526/1‑68 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:3251706/1‑68 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:2112486/1‑68 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:1399728/1‑68 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:2804138/1‑68 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:2775823/1‑68 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:2419471/1‑68 (MQ=255) cgcgCTGCGTGACTATCTACCGGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATgg > 1:2433870/1‑68 (MQ=255) cTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGaa < 1:1090823/69‑1 (MQ=255) cTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGaa < 1:1197650/69‑1 (MQ=255) tATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACgctgct < 1:1731425/50‑1 (MQ=255) tGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGaa < 1:3184252/56‑1 (MQ=255) tGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGaa < 1:300420/56‑1 (MQ=255) tGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGaa < 1:2408930/56‑1 (MQ=255) tGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGAACAGGATCACGGc < 1:698340/68‑1 (MQ=255) tGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGAACAGGATCACGGc < 1:1131200/68‑1 (MQ=255) aGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGAACAGGATCACGGCTa < 1:2462115/66‑1 (MQ=255) | CAGCGGTCTGGATCTGCGTATTCATCTGCCGGGCCGCGAGGCACACGCGCTGCGTGACTATCTGCCAGATGCCTTTGGGCCGAAAGATCTGGAGATTAAAACGCTGCTGATGGACGAACAGGATCACGGCTA > minE/1371292‑1371423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |