Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 111,038 | C→T | 35.8% | P202S (CCA→TCA) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 111,038 | 0 | C | T | 35.8% | 23.9 / 18.9 | 39 | P202S (CCA→TCA) | aceF | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
Reads supporting (aligned to +/- strand): ref base C (15/10); new base T (2/12); total (17/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.77e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCAGGCGCGGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGCGGTGACGAAGTTGAAGTGACTGAAGT > minE/110981‑111105 | gCAGGCGCGGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTgg < 1:459906/68‑1 (MQ=255) gCAGGCGCGGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTgg < 1:3096628/68‑1 (MQ=255) cgcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTgg > 1:1841440/1‑63 (MQ=255) cgcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCg > 1:881340/1‑65 (MQ=255) cgcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGt > 1:1132958/1‑66 (MQ=255) cgcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGt > 1:176621/1‑66 (MQ=255) cgcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGt > 1:2383850/1‑66 (MQ=255) cgcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGt > 1:2822082/1‑66 (MQ=255) cgcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGt > 1:3128554/1‑66 (MQ=255) cgcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCACTGCACCAGCGGCTGGCGt > 1:2058129/1‑66 (MQ=255) cgcgGCAGCTCCGGACGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGt > 1:3006662/1‑66 (MQ=255) gcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGaa > 1:2287845/1‑68 (MQ=255) gcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGaa > 1:3319047/1‑68 (MQ=255) gcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGaa > 1:2126058/1‑68 (MQ=255) gcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGaa > 1:2146041/1‑68 (MQ=255) gcgGCAGCTCCGGCCGCTAAACAGGAAGCAGCGCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGaa > 1:2680358/1‑68 (MQ=255) gCTCCGGCGGCTAAACAGGAAGCGGCTCCGGCGGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGtt > 1:199108/1‑69 (MQ=255) gCTCCGGCGGCTAAACAGGAAGCGGCTCCGGCAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGtt > 1:252189/1‑69 (MQ=255) gCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGtt < 1:193003/69‑1 (MQ=255) gCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGtt < 1:3230400/69‑1 (MQ=255) gCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGtt < 1:1767932/69‑1 (MQ=255) ccGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGtt < 1:124064/68‑1 (MQ=255) gAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGTTCAGGATATcggc > 1:1349981/1‑69 (MQ=255) cAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:133538/69‑1 (MQ=255) cAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:2393615/69‑1 (MQ=255) cAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:860000/69‑1 (MQ=255) cAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:537316/69‑1 (MQ=255) cAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:2202199/69‑1 (MQ=255) cAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:1978538/69‑1 (MQ=255) cAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:189582/69‑1 (MQ=255) cAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:2396482/69‑1 (MQ=255) cAGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:3407571/69‑1 (MQ=255) aGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:1856447/68‑1 (MQ=255) aGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:42097/68‑1 (MQ=255) aGCGGCCCCTGCATCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGTGGTGACGAAGTTg < 1:340505/68‑1 (MQ=255) ggCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGCGGTGACGAAGTTGAAGt < 1:3286317/69‑1 (MQ=255) gCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGCGGTGACGAAGTTGAAGTg < 1:2118296/69‑1 (MQ=255) gCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGCGGTGACGAAGTTGAAGTg < 1:83258/69‑1 (MQ=255) cccTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGCGGTGACGAAGTTGAAGTGAc < 1:520259/69‑1 (MQ=255) ccAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGCGGTGACGAAGTTGAAGTGACTGAAGt < 1:2319990/68‑1 (MQ=255) ccAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGCGGTGACGAAGTTGAAGTGACTGAAGt < 1:2467755/68‑1 (MQ=255) ccAGCGGCTGGCGTGAAAGAAGTTAACGTTACGGATATCGGCGGTGACGAAGTTGAAGTGACTGAAGt < 1:2248332/68‑1 (MQ=255) | GCAGGCGCGGCAGCTCCGGCCGCTAAACAGGAAGCAGCTCCGGCAGCGGCCCCTGCACCAGCGGCTGGCGTGAAAGAAGTTAACGTTCCGGATATCGGCGGTGACGAAGTTGAAGTGACTGAAGT > minE/110981‑111105 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |