| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,417,873 | T→C | 46.4% | intergenic (+154/‑179) | proL → / → narP | tRNA‑Pro/DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,417,873 | 0 | T | C | 46.4% | 5.0 / 57.7 | 69 | intergenic (+154/‑179) | proL/narP | tRNA‑Pro/DNA‑binding response regulator in two‑component regulatory system with NarQ or NarX |
| Reads supporting (aligned to +/- strand): ref base T (21/16); new base C (19/13); total (40/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTTTATTTTCTGTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGACAAG > minE/1417806‑1417936 | tGTTTATTTTCTGTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCtt < 1:182712/69‑1 (MQ=255)tGTTTATTTTCTGTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCtt < 1:961976/69‑1 (MQ=255)tGTTTATTTTCTGTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCtt < 1:255666/69‑1 (MQ=255)tGTTTATTTTCTGTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCtt < 1:1507783/69‑1 (MQ=255) tATTTTCTGTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTtg > 1:3040197/1‑66 (MQ=255) tATTTTCTGTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTtg > 1:3036001/1‑66 (MQ=255) gTTAACTGTTTAAAGAAATGCACAAGTTTTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt < 1:2651289/68‑1 (MQ=255) gTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt < 1:997512/68‑1 (MQ=255) gTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt < 1:378965/68‑1 (MQ=255) gTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt < 1:1543678/68‑1 (MQ=255) gTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt < 1:149982/68‑1 (MQ=255) gTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCaaa > 1:2388106/1‑69 (MQ=255) gTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCaaa > 1:241349/1‑69 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGc > 1:1425833/1‑59 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:2327422/1‑60 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:1454744/1‑60 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:2644543/1‑60 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:1206197/1‑60 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:444086/1‑60 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:2497470/1‑60 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:1659325/1‑60 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:744757/1‑60 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:1421690/1‑60 (MQ=255) tttAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCt > 1:1447189/1‑60 (MQ=255) aTGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCtt > 1:3170337/1‑69 (MQ=255) aTGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCtt > 1:3088228/1‑69 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:2883561/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:1062048/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:2381909/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:2767082/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:2570565/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:2280032/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:1894688/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:448439/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:1742784/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:1704250/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:1538498/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:710039/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:1469810/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:1231192/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:1156899/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtata > 1:1130388/1‑68 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTtat > 1:2537528/1‑67 (MQ=255) caAGTATTGTGATTGATTTTTTAGTTGTTTTTACTGATGAGaa > 1:2598475/1‑43 (MQ=38) caAGTATTGTGATTGATTTTTTAGTTCTTTTTCCTGATGAGAAGCTGATGCAAAATTc > 1:1295429/1‑58 (MQ=255) aTTGTGATTGATTTTTTAGTTGTTTTTCTTCATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGaaa < 1:2299206/69‑1 (MQ=255) gtgATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAatg > 1:2928899/1‑69 (MQ=255) gtgATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAatg > 1:1766278/1‑69 (MQ=255) gtgATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAat < 1:2778686/68‑1 (MQ=255) gtgATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAat < 1:953011/68‑1 (MQ=255) ttttAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAg > 1:2664576/1‑68 (MQ=255) ttttAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAg > 1:891167/1‑68 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:1077149/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:838108/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:1526760/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:708440/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:637016/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:1769365/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:3238542/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:2326614/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:2953859/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:2863493/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:2859707/60‑1 (MQ=255) ttttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:282662/60‑1 (MQ=255) tttAGTTGTTTTTCCTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAGatga < 1:2313789/59‑1 (MQ=255) tgttTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGAc < 1:2148687/69‑1 (MQ=255) tgttTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGAc < 1:3220619/69‑1 (MQ=255) tgttTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGAc < 1:312482/69‑1 (MQ=255) tgttTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGAc < 1:1363575/69‑1 (MQ=255) tgttTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGAc < 1:833865/69‑1 (MQ=255) tgttTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGAc < 1:2880603/69‑1 (MQ=255) tttCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGACAAg < 1:2462104/68‑1 (MQ=255) tttCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGACAAAGCGAACGACAAg < 1:483228/68‑1 (MQ=255) | TGTTTATTTTCTGTTAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGACAAG > minE/1417806‑1417936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |