| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,438,595 | G→A | 42.8% | I164I (ATC→ATT) | yojL ← | predicted thiamine biosynthesis lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,438,595 | 0 | G | A | 42.8% | 15.8 / 39.3 | 56 | I164I (ATC→ATT) | yojL | predicted thiamine biosynthesis lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (28/4); new base A (20/4); total (48/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGTGGAGAGATCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGAA > minE/1438531‑1438659 | cGGTGGAGAGATCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATtgatga < 1:263490/69‑1 (MQ=255)cGGTGGAGAGATCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATtgatga < 1:2642857/69‑1 (MQ=255)cGGTGGAGAGATCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATtgatga < 1:2881461/69‑1 (MQ=255)cGGTGGAGAGATCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATtgatga < 1:294223/69‑1 (MQ=255)cGGTGGAGAGATCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATtgatga < 1:3181058/69‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:3036824/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:2531442/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:2674486/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:2172962/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:1816340/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:295770/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:377925/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:632918/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:75021/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:861257/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:1385127/60‑1 (MQ=255) gagagaTCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:863363/60‑1 (MQ=255) tCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGc > 1:1805307/1‑69 (MQ=255) tCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGc > 1:2689382/1‑69 (MQ=255) tCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGc > 1:3044851/1‑69 (MQ=255) tCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGc > 1:1413873/1‑69 (MQ=255) tCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGc > 1:1600008/1‑69 (MQ=255) tCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGc > 1:3230030/1‑69 (MQ=255) tCGACATATAAATCCGGCAGGTCTTTTTGCAGATATAGCTGATGCGACTGATTGATGACCGTCAGGTGc > 1:1193848/1‑69 (MQ=255) ggCAGGTCTTTTTGCAGATATTGCTGATGCGACtgattg < 1:28957/39‑1 (MQ=255) cAGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGTAAGCCGGTTTTGGc < 1:1348660/69‑1 (MQ=255) cAGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGTAAGCCGGTTTTGGc < 1:1196890/69‑1 (MQ=255) cAGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGTAAGCCGGTTTTGGc < 1:2832108/69‑1 (MQ=255) cAGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGTAAGCCGGTTTTGGc < 1:2493099/69‑1 (MQ=255) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:2566540/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:1127271/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:1218001/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:2539799/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:2343105/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:2229792/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:2771071/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:2168664/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:201918/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:1732470/1‑54 (MQ=38) aGGTTTTTTTGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCTGt > 1:3196865/1‑54 (MQ=38) tttttGCAGATATTGCTGATGCGCCTGATTAATGACCGTCAGGTGCt > 1:662075/1‑47 (MQ=39) tttttGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCt > 1:2874321/1‑47 (MQ=255) tttttGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCt > 1:753127/1‑47 (MQ=255) tttttGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCt > 1:996389/1‑47 (MQ=255) tttttGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCt > 1:3347283/1‑47 (MQ=255) tttttGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCt > 1:440091/1‑47 (MQ=255) tttttGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCt > 1:1206684/1‑47 (MQ=255) tttttGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCt > 1:2328774/1‑47 (MQ=255) tttttGCAGATATTGCTGATGCGACTGATTAATGACCGTCAGGTGCt > 1:1868909/1‑47 (MQ=255) tttGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCttt < 1:1477797/64‑1 (MQ=255) tttGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCttt > 1:1452330/1‑64 (MQ=255) tttGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCttt < 1:1435971/64‑1 (MQ=255) tttGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCttt < 1:145195/64‑1 (MQ=255) tttGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCttt < 1:1807402/64‑1 (MQ=255) atTGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCt > 1:2399107/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGcc > 1:2495779/1‑42 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTcatc > 1:218530/1‑58 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCt > 1:811097/1‑68 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTg > 1:3188944/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTg > 1:2444651/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTg > 1:409851/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTg > 1:623214/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTg > 1:1359735/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTg > 1:815243/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTg > 1:1070637/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTg > 1:1003667/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTg > 1:1862016/1‑69 (MQ=255) ttGCTGATGCGACTGATTGATGACCGTCAGGTCCTGTAAGCCGGt > 1:2628146/1‑45 (MQ=255) gATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTcc > 1:3172364/1‑68 (MQ=255) gATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCt > 1:1529971/1‑69 (MQ=255) gATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCt > 1:1790277/1‑69 (MQ=255) gATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCt > 1:564346/1‑69 (MQ=255) gATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCt > 1:1373160/1‑69 (MQ=255) gATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCt > 1:2877024/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:2573913/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:164086/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:2387557/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:2337598/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:2741372/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:1984636/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:660825/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:183910/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:1780748/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:1648190/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:3425991/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:1479377/1‑69 (MQ=255) gattaatGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGaa > 1:148732/1‑69 (MQ=255) | CGGTGGAGAGATCGACATATAAATCCGGCAGGTCTTTTTGCAGATATTGCTGATGCGACTGATTGATGACCGTCAGGTGCTGTAAGCCGGTTTTGGCTTTCATCGCATCGATCTGTTCCTGGCTCGGAA > minE/1438531‑1438659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |