| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,440,158 | T→C | 41.8% | K48K (AAA→AAG) | ompC ← | outer membrane porin protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,440,158 | 0 | T | C | 41.8% | 16.3 / 38.6 | 55 | K48K (AAA→AAG) | ompC | outer membrane porin protein C |
| Reads supporting (aligned to +/- strand): ref base T (29/3); new base C (2/21); total (31/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.09e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.20e-01 | |||||||||||
TAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTCTTTGT > minE/1440100‑1440225 | tAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTtgttgt > 1:983258/1‑66 (MQ=255)tAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTtgttgt > 1:2795273/1‑66 (MQ=255)tAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTtgttgt > 1:558065/1‑66 (MQ=255)tAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTtgttgt > 1:3155438/1‑66 (MQ=255)tAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTtgttgt > 1:540491/1‑66 (MQ=255)tAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTtgttgt > 1:3190400/1‑66 (MQ=255)tAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTtgttgt > 1:179851/1‑66 (MQ=255)tAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTtgttgt > 1:3287183/1‑66 (MQ=255)tAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGCCGCCATCTACATCTTtgttgt > 1:2648753/1‑66 (MQ=255)tAACCTGAGTTTCAACTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTtgttgt > 1:856935/1‑66 (MQ=255) gAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAAt < 1:948185/69‑1 (MQ=255) gAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAAt < 1:2407687/69‑1 (MQ=255) gAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAAt < 1:2393863/69‑1 (MQ=255) ccAAGACGCATTTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:3270542/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATat < 1:552301/54‑2 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:3409691/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:2550684/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:2693041/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:1072774/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:547791/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:3112665/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:340463/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:244745/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:1194802/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:1416051/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:1566446/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:1856807/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:88895/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:1926416/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:2301143/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:2342291/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:2345868/54‑1 (MQ=255) ccAAGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:587419/54‑1 (MQ=255) aGACGCATGTAGGTCTGGTCGCCATCTACAGACTTGTCGTCAGAGAAATAg < 1:642649/51‑1 (MQ=255) tAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTc > 1:3401855/1‑53 (MQ=255) cTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTaa > 1:3023826/1‑69 (MQ=255) cTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTaa > 1:3400980/1‑69 (MQ=255) cTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTaa > 1:2453165/1‑69 (MQ=255) cTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTa > 1:2306680/1‑68 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACt > 1:3296727/1‑40 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:821917/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:450527/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:2855934/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:3419055/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:3197362/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:3171722/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:2823002/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:260361/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:2359506/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:2231148/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:196538/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:1911918/1‑69 (MQ=255) tACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:1410587/1‑69 (MQ=255) tACATCCTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:3030294/1‑69 (MQ=255) tACATCCTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTc > 1:1115928/1‑69 (MQ=255) tttGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTCTttgt > 1:1971028/1‑68 (MQ=255) | TAACCTGAGTTTCACCTTTGAAGCCAAGACGCATGTAGGTCTGGTCGCCATCTACATCTTTGTTGTCAGAGAAATAGTGCAGGCCGTCTACTTTACCGTACAGATCTAATTTGTTGCCGTCTTTGT > minE/1440100‑1440225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |