| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,448,026 | A→G | 50.0% | L144L (TTA→TTG) | atoS → | sensory histidine kinase in two‑component regulatory system with AtoC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,448,026 | 0 | A | G | 50.0% | ‑4.2 / 59.4 | 66 | L144L (TTA→TTG) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC |
| Reads supporting (aligned to +/- strand): ref base A (17/16); new base G (23/10); total (40/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
AATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTG > minE/1447961‑1448081 | aatGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGtt < 1:3019717/69‑1 (MQ=255)aatGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGtt < 1:3342928/69‑1 (MQ=255)aatGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGtt < 1:1380926/69‑1 (MQ=255) atGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGttt > 1:2922666/1‑69 (MQ=255) atGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGttt > 1:2793410/1‑69 (MQ=255) aCCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTcaggca > 1:1980572/1‑67 (MQ=255) aCCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTcaggca > 1:2189962/1‑67 (MQ=255) aCCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTcaggca > 1:3228305/1‑67 (MQ=255) cAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg < 1:888163/69‑1 (MQ=255) cAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg < 1:2751140/69‑1 (MQ=255) cAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg < 1:247958/69‑1 (MQ=255) cAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg < 1:2423988/69‑1 (MQ=255) cAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg < 1:795925/69‑1 (MQ=255) cAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg < 1:1187411/69‑1 (MQ=255) cAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg < 1:2012068/69‑1 (MQ=255) cAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg < 1:1912230/69‑1 (MQ=255) cAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGAAGGTGcgcg < 1:738754/69‑1 (MQ=255) aGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGcgcg < 1:3196113/68‑1 (MQ=255) tCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGa < 1:1431051/69‑1 (MQ=255) tCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGa < 1:1553962/69‑1 (MQ=255) tCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGa < 1:2045655/69‑1 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTcag > 1:2146092/1‑47 (MQ=39) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:1437915/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:447125/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:2948528/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:458754/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:425732/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:917085/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:2724978/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:6941/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:1388857/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:337266/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:2409446/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:706705/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:1482120/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:228005/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:149379/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:1279222/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:1516086/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:1680629/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGatat > 1:123288/1‑69 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGata > 1:1508011/1‑68 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGata > 1:649477/1‑68 (MQ=255) cccTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTCAGGCAGGCAGGTGCGCGGCGata > 1:1076057/1‑68 (MQ=255) gAAGTGATGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTc < 1:2709577/68‑1 (MQ=255) aaGTGATGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGGGCGCGGCGATATTTTGAATTc < 1:1674981/67‑1 (MQ=255) aTGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTc < 1:3128845/69‑1 (MQ=255) aTGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTc < 1:2093700/69‑1 (MQ=255) aTGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTc < 1:2890931/69‑1 (MQ=255) aTGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTc < 1:1967740/69‑1 (MQ=255) aTGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTc < 1:1961792/69‑1 (MQ=255) aTGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTc < 1:1250159/69‑1 (MQ=255) aTGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTc < 1:970463/69‑1 (MQ=255) aTGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTc < 1:99355/69‑1 (MQ=255) cAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATg > 1:2333248/1‑59 (MQ=255) cAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCAtt > 1:1124940/1‑68 (MQ=255) cAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:1012709/1‑69 (MQ=255) cAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:716281/1‑69 (MQ=255) cAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:2310793/1‑69 (MQ=255) cAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:2273986/1‑69 (MQ=255) cAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:1275324/1‑69 (MQ=255) cAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:1042739/1‑69 (MQ=255) cAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCCCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:1315936/1‑69 (MQ=255) cAAATACCACTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:2653326/1‑69 (MQ=255) cAAATACCACTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTg > 1:2649204/1‑69 (MQ=255) tAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTccc > 1:281947/1‑52 (MQ=255) | AATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTGATGCGTACAAATACCCCTTTAGTTTATTCAGGCAGGCAGGTGCGCGGCGATATTTTGAATTCAATGCTCCCCATTG > minE/1447961‑1448081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |