Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,456,231 C→T 100% T373T (ACG→ACA yfaQ ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,456,2310CT82.0% 29.3 / 0.6 22T373T (ACG→ACAyfaQhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (2/2);  new base T (0/18);  total (2/20)
Fisher's exact test for biased strand distribution p-value = 2.60e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TGAGATCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAAAAAG  >  minE/1456164‑1456295
                                                                   |                                                                
tGAGATCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGc                                                                  <  1:919548/68‑1 (MQ=255)
tGAGATCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGc                                                                  <  1:715221/68‑1 (MQ=255)
tGAGATCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGc                                                                  <  1:678244/68‑1 (MQ=255)
tGAGATCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGc                                                                  <  1:2306112/68‑1 (MQ=255)
tGAGATCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGc                                                                  <  1:523465/68‑1 (MQ=255)
  agaTCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGc                                                                  <  1:1212119/66‑1 (MQ=255)
                          gTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAg                                        >  1:2472301/1‑68 (MQ=255)
                          gTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAg                                        >  1:1213129/1‑68 (MQ=255)
                            tCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAGGc                                      <  1:2254583/68‑1 (MQ=255)
                            tCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAGGc                                      <  1:1909618/68‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:646069/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:2644720/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:2786127/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:3405069/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:982083/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:66887/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:1006890/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:2185515/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:2177078/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:18720/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:1831916/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:1773017/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:1664839/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:1573261/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:1468606/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:10837/69‑1 (MQ=255)
                                                               gCTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAACAAAg  <  1:3173866/69‑1 (MQ=255)
                                                               ccTGTGTGGCGCTGCTGTCAGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAGAAAg  <  1:1608549/68‑1 (MQ=255)
                                                                   |                                                                
TGAGATCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAGGCAATCGCCTTCCCGATTGGCGTTTTGCTGTAAAAAAG  >  minE/1456164‑1456295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: