Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 1,479,321 | T→C | 17.8% | L202L (TTA→TTG) ‡ | glpT ← | sn‑glycerol‑3‑phosphate transporter |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 1,479,321 | 0 | T | C | 17.8% | 147.1 / 20.3 | 95 | L202L (TTA→TTG) ‡ | glpT | sn‑glycerol‑3‑phosphate transporter |
Reads supporting (aligned to +/- strand): ref base T (29/49); new base C (9/8); total (38/57) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.79e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 |
Only 100 of 104 total aligned reads displayed.
TTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGTC > minE/1479254‑1479374 | ttttGTACTCTTCGATCGGCGGCAAGCGACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGaat < 1:3192733/68‑1 (MQ=255) ttttGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGaat < 1:1219597/68‑1 (MQ=255) ttttGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGaat < 1:195644/68‑1 (MQ=255) ttttGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGaat < 1:1472222/68‑1 (MQ=255) ttttGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGaat < 1:2136137/68‑1 (MQ=255) ttttGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGaat < 1:1796094/68‑1 (MQ=255) ttttGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGaat < 1:823478/68‑1 (MQ=255) ttttGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGaat < 1:1059976/68‑1 (MQ=255) aCTCTTCGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGcc < 1:599254/68‑1 (MQ=255) aCTCTTCGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGcc < 1:2870282/68‑1 (MQ=255) aCTCTTCGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGcc < 1:234171/68‑1 (MQ=255) aCTCTTCGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGcc < 1:2278222/68‑1 (MQ=255) aCTCTTCGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGcc < 1:778059/68‑1 (MQ=255) aCTCTTCGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGcc < 1:2055613/68‑1 (MQ=255) aCTCTTCGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCACATCATCGCAAAGGCGAACAGTGcc < 1:1786919/68‑1 (MQ=255) ctctTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGccac < 1:1040397/69‑1 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGcaacca > 1:1742687/1‑68 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:1711667/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:1706251/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:2411896/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:189829/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:2656802/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:2660483/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:3058333/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:454258/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:469677/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:631791/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:1574957/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg > 1:1568036/1‑69 (MQ=255) ttCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCAACCAg > 1:54233/1‑69 (MQ=255) tCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGaat < 1:1347365/57‑1 (MQ=255) cGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGCTACCAGaa > 1:1094397/1‑69 (MQ=255) cGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGCCACCAGaa > 1:492884/1‑69 (MQ=255) cGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGCCACCAGaa > 1:18196/1‑69 (MQ=255) cGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGCCACCAGaa > 1:2498881/1‑69 (MQ=255) cGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGCCACCAGaa > 1:2094962/1‑69 (MQ=255) cGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGCCACCAGaa > 1:860509/1‑69 (MQ=255) cGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGCCACCAGaa > 1:2352197/1‑69 (MQ=255) cGATCGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGCCACCAGaa > 1:1092813/1‑69 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGTGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:2926525/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:366430/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:1190398/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:143953/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:1186530/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:523000/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:2677165/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:68232/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:1072109/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:888697/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:1194760/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:3125886/67‑1 (MQ=255) cGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAg < 1:1725432/67‑1 (MQ=255) cGATAGGCGGCAGGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGCCACCAGaa > 1:3172906/1‑69 (MQ=255) cggcggCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATgg > 1:1760204/1‑68 (MQ=255) gATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCata < 1:2954193/69‑1 (MQ=255) gATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCata < 1:1843071/69‑1 (MQ=255) gATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCata < 1:1178618/69‑1 (MQ=255) gATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCata < 1:2642293/69‑1 (MQ=255) gATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCata < 1:281854/69‑1 (MQ=255) gATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATCGCGCAGAAAGCATGCata < 1:1434236/69‑1 (MQ=255) gATTGCGGGGTATCGCGCATCATCGCAAAGGCGAACAGTGcc < 1:1660984/42‑1 (MQ=38) aTTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCata < 1:57650/68‑1 (MQ=255) tGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:3218551/69‑1 (MQ=255) tGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:2858138/69‑1 (MQ=255) tGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:311006/69‑1 (MQ=255) tGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:2187086/69‑1 (MQ=255) tGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:2911245/69‑1 (MQ=255) tGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:2110634/69‑1 (MQ=255) tGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:833939/69‑1 (MQ=255) tGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:3030888/69‑1 (MQ=255) tGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:1824296/69‑1 (MQ=255) gggTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATag < 1:269093/65‑1 (MQ=255) tCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGcgccgc > 1:1623817/1‑68 (MQ=255) tCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCa > 1:2455122/1‑69 (MQ=255) tCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCa > 1:3425515/1‑69 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCa > 1:937571/1‑53 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCa < 1:989879/53‑1 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCa < 1:502331/53‑1 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCa < 1:3315503/53‑1 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCa < 1:2840326/53‑1 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATagag > 1:1938050/1‑60 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGcgccg > 1:1427617/1‑65 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCa > 1:1853906/1‑67 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCa > 1:548750/1‑67 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCAt > 1:2893523/1‑68 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCAt > 1:1954507/1‑68 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCAt > 1:73561/1‑68 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCAt > 1:692376/1‑68 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCAt > 1:1455785/1‑68 (MQ=255) gcgcATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCAt > 1:1316355/1‑68 (MQ=255) tcatcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGt < 1:2529684/69‑1 (MQ=255) tcatcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGt < 1:2583092/69‑1 (MQ=255) tcatcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGt < 1:145790/69‑1 (MQ=255) tcatcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGt < 1:2821353/69‑1 (MQ=255) tcatcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGt < 1:2834929/69‑1 (MQ=255) tcatcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGt < 1:1613417/69‑1 (MQ=255) tcatcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGt < 1:1664424/69‑1 (MQ=255) catcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGt < 1:1314712/68‑1 (MQ=255) catcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGTc < 1:1121087/69‑1 (MQ=255) catcGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGTc < 1:1548812/69‑1 (MQ=255) | TTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCATCATCGCAAAGGCGAATAATGCCACCAGAATGGCGCAGAAAGCAGGCATATAGAGCGCCGCATGCCAGTC > minE/1479254‑1479374 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |