| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,490,568 | C→A | 48.0% | G155G (GGG→GGT) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,490,568 | 0 | C | A | 48.0% | 30.1 / 104.1 | 104 | G155G (GGG→GGT) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Reads supporting (aligned to +/- strand): ref base C (23/31); new base A (44/6); total (67/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.38e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 104 total aligned reads displayed.
GTCACGACGAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTT > minE/1490512‑1490630 | gTCACGACGAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGa < 1:1050210/69‑1 (MQ=255)gTCACGACGAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGa < 1:83924/69‑1 (MQ=255)gTCACGACGAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGa < 1:1088983/69‑1 (MQ=255)gTCACGACGAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGa < 1:327466/69‑1 (MQ=255)gTCACGACGAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGa < 1:2349189/69‑1 (MQ=255) tCACGACGAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGa < 1:1141974/68‑1 (MQ=255) cACGACGAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGAt > 1:3334594/1‑68 (MQ=255) acgacgAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAg < 1:1183609/69‑1 (MQ=255) acgacgAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAg < 1:277061/69‑1 (MQ=255) acgaACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAg < 1:2655473/69‑1 (MQ=255) acgaACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAg < 1:660913/69‑1 (MQ=255) acgaACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAg < 1:404060/69‑1 (MQ=255) acgaACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAg < 1:1856846/69‑1 (MQ=255) ggaACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAg < 1:838396/67‑1 (MQ=255) cGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAg < 1:2055468/69‑1 (MQ=255) cGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAg < 1:2070125/69‑1 (MQ=255) cGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAg < 1:1903306/69‑1 (MQ=255) cGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAg < 1:166038/69‑1 (MQ=255) cGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAg < 1:1697740/69‑1 (MQ=255) aTTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCa < 1:1762814/67‑1 (MQ=255) tGCCGCTGCGGCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:1069404/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTTTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:1912830/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGcc < 1:2740385/69‑1 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGcc < 1:805883/69‑1 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGcc < 1:346277/69‑1 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGcc < 1:1745234/69‑1 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCg > 1:1397794/1‑40 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGAt > 1:704900/1‑42 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCGCAGGCCCACGcc > 1:1315214/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:3367348/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:486777/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:3309176/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:3263544/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:3059437/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:550180/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:705673/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:864850/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:2243057/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:982314/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:1319120/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:1832259/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:1339377/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:139468/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:1419451/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:1465678/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:1658238/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:1721424/1‑69 (MQ=255) tGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCAACGcc > 1:729266/1‑69 (MQ=255) tGCCGCTGCGCCATACTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGcc > 1:2329386/1‑69 (MQ=255) gCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCTACGCCt > 1:275118/1‑69 (MQ=255) gCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCt > 1:3231143/1‑69 (MQ=255) gCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCt > 1:3329263/1‑69 (MQ=255) gCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCt < 1:2189320/69‑1 (MQ=255) gCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCt > 1:228642/1‑69 (MQ=255) gCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCt > 1:3126019/1‑69 (MQ=255) gCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCt > 1:1554519/1‑69 (MQ=255) cgcCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGa < 1:136081/41‑1 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCg > 1:1946332/1‑68 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:1305302/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:1202591/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:1967166/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:1558116/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:549574/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:47711/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:463617/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:341752/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:3237553/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:3112285/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:2219177/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:282758/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:1050552/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:1258816/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:873324/1‑69 (MQ=255) cATTCTTCGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGa > 1:1292570/1‑69 (MQ=255) tcttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGc > 1:3261709/1‑48 (MQ=255) tcttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAgg > 1:780142/1‑68 (MQ=255) tcttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAgg > 1:2101957/1‑68 (MQ=255) tcttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAgg > 1:1739937/1‑68 (MQ=255) tcttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAgg > 1:3343847/1‑68 (MQ=255) tcttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAgg > 1:1203623/1‑68 (MQ=255) tcttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAgg > 1:1900824/1‑68 (MQ=255) cttcGGATCGGTGTAATAGAACCCGATCAGCAGATTGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTa > 1:702939/1‑69 (MQ=255) cttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTa > 1:2422681/1‑69 (MQ=255) cttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTa > 1:1016088/1‑69 (MQ=255) cttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTa < 1:2766525/69‑1 (MQ=255) cttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTa > 1:738239/1‑69 (MQ=255) cttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTa > 1:1233963/1‑69 (MQ=255) cttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTa > 1:3292456/1‑69 (MQ=255) cttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTa > 1:3308500/1‑69 (MQ=255) cttcGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCACAGCCGAGGTa > 1:292083/1‑69 (MQ=255) ttcGGATCGGTGTAATAGAAACCGATCAGCAGATAGGAGCACAg < 1:391415/44‑1 (MQ=255) aTAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGtt < 1:2908115/69‑1 (MQ=255) aTAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGtt < 1:88182/69‑1 (MQ=255) gAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGtt < 1:3128132/66‑1 (MQ=255) gAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGtt < 1:592687/66‑1 (MQ=255) gAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGtt < 1:1979686/66‑1 (MQ=255) gAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGtt < 1:2791980/66‑1 (MQ=255) gAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGtt < 1:2304903/66‑1 (MQ=255) gAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGtt < 1:1741056/66‑1 (MQ=255) gAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGtt < 1:929451/66‑1 (MQ=255) | GTCACGACGAACGCTTTCATTGCCGCTGCGCCATTCTTCGGATCGGTGTAATAGAACCCGATCAGCAGATAGGAGCACAGGCCCACGCCTTCCCAGCCGAGGTACATCAGCAGCAGGTT > minE/1490512‑1490630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |