| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,501,821 | A→G | 42.8% | D269D (GAT→GAC) | lrhA ← | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,501,821 | 0 | A | G | 42.8% | 21.3 / 65.1 | 84 | D269D (GAT→GAC) | lrhA | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base A (20/28); new base G (13/23); total (33/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 | |||||||||||
GCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACA > minE/1501754‑1501884 | gCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGa > 1:3364785/1‑68 (MQ=255)gCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGAt > 1:108943/1‑69 (MQ=255)gCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGAt > 1:1173902/1‑69 (MQ=255)gCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGAt > 1:2532044/1‑69 (MQ=255)gCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGAt > 1:2473215/1‑69 (MQ=255)gCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGAt > 1:2941318/1‑69 (MQ=255)gCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGAt > 1:1601262/1‑69 (MQ=255) aCGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCa < 1:3167774/68‑1 (MQ=255) aCGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCa < 1:750877/68‑1 (MQ=255) aCGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCa < 1:1155920/68‑1 (MQ=255) aCGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCa < 1:659328/68‑1 (MQ=255) aCGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCa < 1:2742074/68‑1 (MQ=255) aCGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCa < 1:3211390/68‑1 (MQ=255) aCGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCa < 1:2959263/68‑1 (MQ=255) cGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCa < 1:1916778/67‑1 (MQ=255) gTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCaa < 1:52533/69‑1 (MQ=255) tccccTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:944526/64‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:2998632/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:2556292/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:3064543/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:2250581/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:2059549/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:2789200/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:2558467/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:3180164/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:1856510/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:3215207/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:1703122/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:1698666/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:1575933/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:41255/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:604448/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:14586/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:1431077/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:767444/67‑1 (MQ=255) tCGCCTGATAGATCACCTGGGCCACCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:3428560/67‑1 (MQ=255) tGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt < 1:2912638/69‑1 (MQ=255) tGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt < 1:622933/69‑1 (MQ=255) tGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt < 1:1018272/69‑1 (MQ=255) tGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt < 1:2541288/69‑1 (MQ=255) tGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt < 1:2443683/69‑1 (MQ=255) tGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt < 1:1044813/69‑1 (MQ=255) gATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt < 1:1496412/68‑1 (MQ=255) aCCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt < 1:52171/60‑1 (MQ=255) tGGGCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:3197562/50‑1 (MQ=255) tGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg < 1:1469481/69‑1 (MQ=255) tGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg < 1:1153099/69‑1 (MQ=255) tGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg < 1:3400043/69‑1 (MQ=255) tGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg < 1:760586/69‑1 (MQ=255) tGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg < 1:2345736/69‑1 (MQ=255) tGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg < 1:2876208/69‑1 (MQ=255) tGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg < 1:2909868/69‑1 (MQ=255) ggCCAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:2021387/48‑1 (MQ=255) cAGCTCATTATTACTGGACGGGTCATAGCACAGCAAATATTCGGt < 1:1630418/45‑1 (MQ=255) cAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATc < 1:197540/69‑1 (MQ=255) cAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATc < 1:1856314/69‑1 (MQ=255) cAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATc < 1:2363978/69‑1 (MQ=255) cTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTAc > 1:589796/1‑69 (MQ=255) tCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg < 1:1009487/60‑1 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGTCGGTAAGCCATCTACTc > 1:1347767/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:2343343/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:594984/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:2527420/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:363125/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:339637/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:3271636/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:3254110/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:1844917/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:3205434/1‑69 (MQ=255) cATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTc > 1:94226/1‑69 (MQ=255) attaCTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCa > 1:3435504/1‑67 (MQ=255) attaCTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCa > 1:467996/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCATcaca > 1:1282923/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGtaca > 1:592293/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:751635/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:965869/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:1471243/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:419204/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:1512434/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:3235023/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:2311275/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:2312253/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:2792506/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:2643981/1‑67 (MQ=255) cGGGTCATAGCACAGCAAATATTAGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca > 1:512031/1‑67 (MQ=255) | GCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACA > minE/1501754‑1501884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |