| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,511,011 | A→G | 25.8% | A93A (GCA→GCG) | pta → | phosphate acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,511,011 | 0 | A | G | 25.8% | 122.7 / 41.5 | 108 | A93A (GCA→GCG) | pta | phosphate acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (46/34); new base G (16/12); total (62/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.01e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
TTGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGACACGTAAG > minE/1510956‑1511077 | ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:190050/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:1644580/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:3410361/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:1542038/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:3186633/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:1694638/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:3186175/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:3152212/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:1807001/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:1324457/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:1960553/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:809158/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:264249/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:123137/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:953628/68‑1 (MQ=255)ttGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:1005656/68‑1 (MQ=255) tGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGCGATCGTCGCAAACTACCACGCTaa < 1:395753/69‑1 (MQ=255) tGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTaa < 1:1174661/69‑1 (MQ=255) tGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTaa < 1:2538194/69‑1 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:165034/1‑66 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:1798695/1‑66 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:2029940/1‑66 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:2064778/1‑66 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:2095673/1‑66 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:809800/1‑66 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:527491/1‑66 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:1229980/1‑66 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:1095460/1‑66 (MQ=255) tCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAacac > 1:1252486/1‑66 (MQ=255) cTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAACACCaaa > 1:602089/1‑69 (MQ=255) ttCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGAc < 1:2430032/67‑1 (MQ=255) aaGATGTTCTGATGGAAGAGATCGTCGCAAACTACCACGCt < 1:768710/41‑1 (MQ=255) ggAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTgg < 1:1351389/68‑1 (MQ=255) ggAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTgg < 1:603363/68‑1 (MQ=255) gAAGAGATCGTCGCAAACTAGCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:1482475/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCCCGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:140436/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCg > 1:3043505/1‑49 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGt > 1:2571456/1‑68 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:2489172/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:2284279/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:964412/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:1080465/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:2206731/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:2633229/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:269440/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:2708927/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:3019804/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:582646/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:3376560/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:1797725/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:1873249/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:2092852/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:144344/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTc > 1:2075573/1‑69 (MQ=255) gAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTT‑AAGGTCTGGTc > 1:1276053/1‑68 (MQ=255) agagATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGaa > 1:1661393/1‑43 (MQ=255) agagATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTccc > 1:827994/1‑69 (MQ=255) agagATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTccc > 1:2412582/1‑69 (MQ=255) agagATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTcc > 1:3306607/1‑68 (MQ=255) agaTCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGa < 1:2445728/69‑1 (MQ=255) agaTCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGa < 1:2449690/69‑1 (MQ=255) gaTCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGa < 1:1371957/68‑1 (MQ=255) cgtcgCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGt > 1:3068598/1‑60 (MQ=255) cgtcgCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGt > 1:3316774/1‑60 (MQ=255) cgtcgCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGt > 1:3339707/1‑60 (MQ=255) cgtcgCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGt > 1:1608273/1‑60 (MQ=255) cgtcgCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGt > 1:1370869/1‑60 (MQ=255) cgtcgCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGacac > 1:1354242/1‑68 (MQ=255) cgtcgCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGacac > 1:1146426/1‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:576260/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:1188278/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:3236378/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:1724227/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:2273226/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:1787647/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:2114072/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:1740482/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:2447502/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:2014646/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:2505301/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:2064293/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:2118269/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:2117152/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGacac > 1:2084731/3‑68 (MQ=255) catcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGaca > 1:2302412/3‑67 (MQ=255) atcgCGAACTACCACGCTAACACCAAAGACGCTGAATTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:2520232/68‑1 (MQ=255) atcgCGAACTACCACGCTAACACCAAAGACGCTGAATTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:3357000/68‑1 (MQ=255) atcgCGAACTACCACGCTAACACCAAAGACGCTGAATTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:1684731/68‑1 (MQ=255) atcgCGAACTACCACGCTAACACCAAAGACGCTGAATTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:2394390/68‑1 (MQ=255) atcgCGAACTACCACGCTAACACCAAAGACGCTGAATTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:1279188/68‑1 (MQ=255) atcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:3323674/68‑1 (MQ=255) atcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:1893342/68‑1 (MQ=255) atcgCGAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:636408/68‑1 (MQ=255) atcgCGAACTACCACGCTAAAACCAAAGACGCTGAATTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:2551028/68‑1 (MQ=255) tcgCGAACTACCACGCTAACACCAAAGACGCTGAATTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:1111903/68‑1 (MQ=255) tcgCGAACTACCACGCTAACACCAAAGACGCTGAATTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:125454/68‑1 (MQ=255) tcgCGAACTACCACGCTAACACCAAAGACGCTGAATTCGTTCTGGTGGAAGGTCTGGTCCCGACACGt < 1:3345336/68‑1 (MQ=255) gCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGACTCGTAAg < 1:437936/69‑1 (MQ=255) gCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGACACGTAAg < 1:2293796/69‑1 (MQ=255) gCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGACACGTAAg < 1:2720206/69‑1 (MQ=255) | TTGAAGGTCTGCTTTCCAGCAATCAGAAAGATGTGCTGATGGAAGAGATCGTCGCAAACTACCACGCTAACACCAAAGACGCTGAAGTCGTTCTGGTTGAAGGTCTGGTCCCGACACGTAAG > minE/1510956‑1511077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |