Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 119,280 T→C 29.6% G51G (GGT→GGC yacL → conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE119,2800TC29.6% 58.4 / 28.3 64G51G (GGT→GGCyacLconserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (31/14);  new base C (15/4);  total (46/18)
Fisher's exact test for biased strand distribution p-value = 5.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATGAAGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGAA  >  minE/119213‑119337
                                                                   |                                                         
aTGAAGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGt                                                           <  1:1882498/68‑1 (MQ=255)
aTGAAGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGt                                                           <  1:2092501/68‑1 (MQ=255)
aTGAAGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGt                                                           <  1:2426418/68‑1 (MQ=255)
aTGAAGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGt                                                           <  1:2650255/68‑1 (MQ=255)
aTGAAGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGt                                                           <  1:2655601/68‑1 (MQ=255)
aTGAAGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGt                                                           <  1:1550179/68‑1 (MQ=255)
   aaGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCg                                                       >  1:982881/1‑69 (MQ=255)
   aaGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCg                                                       >  1:2169544/1‑69 (MQ=255)
   aaGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCg                                                       <  1:1423017/69‑1 (MQ=255)
         tGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGt                                                 <  1:2207585/69‑1 (MQ=255)
         tGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGt                                                 <  1:1318576/69‑1 (MQ=255)
          gaaagaaaACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTc                                                >  1:1980752/1‑69 (MQ=255)
          gaaagaaaACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTc                                                >  1:1008155/1‑69 (MQ=255)
          gaaagaaaACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTc                                                >  1:1765534/1‑69 (MQ=255)
          gaaagaaaACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTc                                                >  1:1440057/1‑69 (MQ=255)
          gaaagaaaACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTc                                                >  1:1294101/1‑69 (MQ=255)
          gaaagaaaACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTc                                                >  1:2920728/1‑69 (MQ=255)
          gaaagaaaACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTc                                                >  1:1102441/1‑69 (MQ=255)
                               tgatgaAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATg                            <  1:2819121/68‑1 (MQ=255)
                               tgatgaAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATg                            <  1:2254637/68‑1 (MQ=255)
                                   gaAGTGGAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATa                        <  1:1570894/68‑1 (MQ=255)
                                   gaAGTGGAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATa                        <  1:2544201/68‑1 (MQ=255)
                                   gaAGTGGAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATa                        <  1:1900362/68‑1 (MQ=255)
                                   gaAGTGGAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATa                        <  1:309013/68‑1 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATacactc                   >  1:980139/1‑66 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:2074315/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:2017031/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:947099/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:492682/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:3065903/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:2976015/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:2696449/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:2742559/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:1013215/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:1087898/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:1131717/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:1913342/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:1465438/1‑69 (MQ=255)
                                        ggAAGACGCAGCGCGCACGCTCAAAGGCAGCGAACGATCCTGGCAGCGGGCAGGGCATGAATACActct                  >  1:1673265/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:126952/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:104995/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:363438/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:3155806/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:1482998/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:1636572/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:2619783/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:1668587/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:1891720/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:1789710/1‑69 (MQ=255)
                                           aCAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCtgtg               >  1:2180959/1‑69 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:1902514/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:761141/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:542744/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:1060095/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:463874/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:3240947/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:1872224/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:1139403/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:1759761/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:2813884/1‑57 (MQ=255)
                                              agcagcGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATa                        >  1:2660614/1‑57 (MQ=255)
                                                      acgcacTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTg    <  1:3229804/69‑1 (MQ=255)
                                                        gcacTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGaa  <  1:3051024/69‑1 (MQ=255)
                                                        gcacTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGaa  <  1:3184376/69‑1 (MQ=255)
                                                        gcacTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGaa  <  1:1134053/69‑1 (MQ=255)
                                                        gcacTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGaa  <  1:1881490/69‑1 (MQ=255)
                                                        gcacTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGaa  <  1:724980/69‑1 (MQ=255)
                                                        gcacTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGaa  <  1:2299148/69‑1 (MQ=255)
                                                        gcacTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGaa  <  1:1691232/69‑1 (MQ=255)
                                                        gcacTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGaa  <  1:1041267/69‑1 (MQ=255)
                                                                   |                                                         
ATGAAGAGGTGAAAGAAAACCTGGCCTTGCTTGATGAAGTGGAACAAGCAGCGCACGCACTGAAAGGTAGCGAACGGTCCTGGCAACGGGCAGGGCATGAATACACCCTGTGGATGGACGGTGAA  >  minE/119213‑119337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: