| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,516,230 | T→C | 59.2% | intergenic (‑215/+44) | cvpA ← / ← dedD | membrane protein required for colicin V production/conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,516,230 | 0 | T | C | 59.2% | 10.7 / 27.3 | 44 | intergenic (‑215/+44) | cvpA/dedD | membrane protein required for colicin V production/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (11/7); new base C (13/13); total (24/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGC > minE/1516165‑1516290 | gCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTatg < 1:2872324/69‑3 (MQ=255)gCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAgg < 1:1923785/69‑1 (MQ=255) aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGa > 1:2079937/1‑69 (MQ=255) aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGa > 1:3069683/1‑69 (MQ=255) aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGa > 1:2334916/1‑69 (MQ=255) aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGa > 1:1542502/1‑69 (MQ=255) aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGa > 1:165644/1‑69 (MQ=255) aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGa > 1:2514363/1‑69 (MQ=255) aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGa > 1:2473092/1‑69 (MQ=255) cGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGAcgc > 1:434621/1‑69 (MQ=255) cGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGAcgc > 1:389857/1‑69 (MQ=255) tGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGt > 1:2731005/1‑68 (MQ=255) tGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGt > 1:2585682/1‑68 (MQ=255) gcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCa < 1:1205899/68‑1 (MQ=255) gcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCa < 1:1731852/68‑1 (MQ=255) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:374672/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:2873095/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:3326974/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:3168003/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:1885099/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:561681/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:1830008/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:612660/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:1651708/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:147323/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:1457175/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:1443978/1‑69 (MQ=21) gCCTTATCCGACCTACGGCTCTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAg > 1:1279956/1‑69 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:51339/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:663647/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:961474/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:3170951/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:1254729/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:3050464/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:3017230/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:257830/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:2397845/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:1872313/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:184224/69‑1 (MQ=21) cTACCCCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:1713975/69‑1 (MQ=21) cTACACCTGCACAGGCCTGATAAGATGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGTGtat < 1:1341058/69‑1 (MQ=21) ccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCg < 1:886418/61‑1 (MQ=255) ccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGc < 1:2503991/67‑1 (MQ=255) ccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGc < 1:1612176/67‑1 (MQ=255) | GCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGC > minE/1516165‑1516290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |