| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 122,068 | C→T | 22.9% | R82R (CGC→CGT) | cueO → | multicopper oxidase (laccase) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 122,068 | 0 | C | T | 22.9% | 68.1 / 13.5 | 52 | R82R (CGC→CGT) | cueO | multicopper oxidase (laccase) |
| Reads supporting (aligned to +/- strand): ref base C (9/31); new base T (7/5); total (16/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.11e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
ACTACCTGGGGCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGCACTGGC > minE/122015‑122129 | aCTACCTGGGGCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACg < 1:1488426/69‑1 (MQ=255)aCTACCTGGGGCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACg < 1:3201360/69‑1 (MQ=255)aCTACCTGGGGCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACg < 1:539650/69‑1 (MQ=255)aCTACCTGGGGCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACg < 1:3201453/69‑1 (MQ=255) aCCTGGGGCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGtt < 1:2374823/69‑1 (MQ=255) aCCTGGGGCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGtt < 1:812094/69‑1 (MQ=255) aCCTGGGGCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGtt < 1:1645679/69‑1 (MQ=255) gCTATAACGGCAATCTGCTGGTGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATc < 1:1977371/68‑1 (MQ=255) gCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATc < 1:2682506/68‑1 (MQ=255) gCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATc < 1:2159115/68‑1 (MQ=255) gCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATc < 1:343665/68‑1 (MQ=255) gCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATc < 1:420524/68‑1 (MQ=255) gCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATc < 1:1061497/68‑1 (MQ=255) gCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATc < 1:1665883/68‑1 (MQ=255) ataACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTAca > 1:3199157/1‑69 (MQ=255) aCGGCAATCTGCTGGGGCCGGCTGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTAcaacc > 1:214490/1‑69 (MQ=255) gCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACg < 1:2677733/50‑1 (MQ=255) gCCGGCGGTGAAATTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAagag < 1:3199927/67‑1 (MQ=255) gCCGGCGGTGAAATTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAagag < 1:2316910/67‑1 (MQ=255) gCCGGCGGTGAAATTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAagag < 1:2789741/67‑1 (MQ=255) gCCGGCGGTGAAATTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAagag < 1:2740404/67‑1 (MQ=255) gCCGGCGGTGAAATTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAagag < 1:2563048/67‑1 (MQ=255) gTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTg < 1:2136818/69‑1 (MQ=255) gTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTg < 1:156982/69‑1 (MQ=255) gTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTg < 1:1301292/69‑1 (MQ=255) gTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTg < 1:1668392/69‑1 (MQ=255) gTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTg < 1:2465557/69‑1 (MQ=255) gTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTg > 1:2700743/1‑69 (MQ=255) tGAAATTACAGCGCTGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGc < 1:1984351/69‑1 (MQ=255) tGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGc < 1:1095163/69‑1 (MQ=255) tGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGc < 1:440837/69‑1 (MQ=255) aaTTACAGCGCGGCAAAGCGGTAACGGTTTATATCTACAACCAACTGACGGAAGAGACAACGTTg < 1:1136639/65‑1 (MQ=255) aTTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACGACGTTGCACt > 1:2572282/1‑68 (MQ=255) aTTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACGACGTTGCACt > 1:2314496/1‑68 (MQ=255) aTTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACGACGTTGCACt > 1:2189357/1‑68 (MQ=255) aTTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACGACGTTGCACt > 1:2065308/1‑68 (MQ=255) aTTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACGACGTTGCACt > 1:195453/1‑68 (MQ=255) aTTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACGACGTTGCACt > 1:583402/1‑68 (MQ=255) aTTACAGCGTGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACGACGTCGCACt > 1:335631/1‑68 (MQ=255) aTTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGt > 1:3220886/1‑62 (MQ=255) aTTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGCACt > 1:651047/1‑68 (MQ=255) tACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGCACTGGc > 1:2454996/1‑69 (MQ=255) tACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGCACTGGc > 1:308800/1‑69 (MQ=255) tACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGCACTGGc > 1:2094815/1‑69 (MQ=255) tACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGCACTGGc > 1:330379/1‑69 (MQ=255) aCAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACt < 1:899172/42‑1 (MQ=255) aCAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACt < 1:757727/42‑1 (MQ=255) aCAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACt < 1:1645975/42‑1 (MQ=255) aCAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACt < 1:1679834/42‑1 (MQ=255) aCAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACt < 1:1769399/42‑1 (MQ=255) aCAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACt < 1:2455629/42‑1 (MQ=255) aCAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACt < 1:2724792/42‑1 (MQ=255) | ACTACCTGGGGCTATAACGGCAATCTGCTGGGGCCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTACAACCAACTGACGGAAGAGACAACGTTGCACTGGC > minE/122015‑122129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |