| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,534,055 | A→G | 55.3% | L66L (TTA→TTG) | yfcN → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,534,055 | 0 | A | G | 55.3% | 14.2 / 51.4 | 67 | L66L (TTA→TTG) | yfcN | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (6/24); new base G (21/16); total (27/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.83e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGAAACGCTTGATCCAGGAGCAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTGCG > minE/1533987‑1534120 | gTGAAACGCTTGATCCAGGAGCAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGttatta < 1:2261356/69‑1 (MQ=255) tGAAACGCTTGATCCAGGAGCAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGttatta < 1:1273006/68‑1 (MQ=255) gAAACGCTTGATCCAGGAGCAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTaaa > 1:2022318/1‑69 (MQ=255) gAAACGCTTGATCCAGGAGCAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTaaa > 1:2666129/1‑69 (MQ=255) gAAACGCTTGATCCAGGAGCAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTaaa > 1:3252062/1‑69 (MQ=255) gAAACGCTTGATCCAGGAGCAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTaaa < 1:1283595/69‑1 (MQ=255) ccAGGAGCAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTcc < 1:3146584/69‑1 (MQ=255) cAGGAACAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCg < 1:1069770/69‑1 (MQ=255) cAGGAACAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCg < 1:1791028/69‑1 (MQ=255) cAGGAACAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCg < 1:1856532/69‑1 (MQ=255) cAGGAACAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCg < 1:1771809/69‑1 (MQ=255) cAGGAACAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCg < 1:908151/69‑1 (MQ=255) cAGGAACAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCg < 1:970670/69‑1 (MQ=255) cAGGAACAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCg < 1:2957544/69‑1 (MQ=255) aGGAACAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCg < 1:2234424/68‑1 (MQ=255) acAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa < 1:3106075/68‑1 (MQ=255) acAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa < 1:1514270/68‑1 (MQ=255) acAGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa < 1:2584306/68‑1 (MQ=255) cAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGaaa < 1:2199187/69‑1 (MQ=255) cAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGaaa < 1:1333011/69‑1 (MQ=255) aGGCCGATGCCAGCCACTATTTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa < 1:337820/67‑1 (MQ=255) gCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAatat < 1:2190577/69‑1 (MQ=255) gCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAatat < 1:1551542/69‑1 (MQ=255) gCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAatat < 1:1593718/69‑1 (MQ=255) gCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAatat < 1:2186767/69‑1 (MQ=255) cTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAatat < 1:1869473/68‑1 (MQ=255) aatattTTTCGGACGAATTTCTGCCATTATTGAATACCGAAGGTCCg < 1:242573/45‑1 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:2224488/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:2661651/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:973003/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:2199969/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:86578/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:583138/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:2218377/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:383993/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:3095200/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:2438598/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:2484031/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:3034801/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:2965009/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:1072854/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:1149314/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:1729705/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:128879/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:1348984/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:1365489/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:1412495/1‑49 (MQ=255) attTTTCGGACGAATTTCAGCCATTATTGAATACCGAAGGTCCGGTCaa > 1:1485954/1‑49 (MQ=255) attTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCa > 1:1433596/1‑69 (MQ=255) attTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCa > 1:1188298/1‑69 (MQ=255) attTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCa > 1:3201637/1‑69 (MQ=255) attTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCa > 1:2737347/1‑69 (MQ=255) attTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCa > 1:162614/1‑69 (MQ=255) attTCTCCGATGAGTTTCAGCCGGTATTAAATACCGAAGGTCCGGTg > 1:2533740/1‑47 (MQ=255) tcCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCa < 1:3212765/68‑1 (MQ=255) gTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCg < 1:1695137/49‑1 (MQ=255) ttCAGCCATTATTGAATACCGAAGGTCCGGTCAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCg < 1:2707855/68‑1 (MQ=255) ttCAGCCATTATTGAATACCGAAGGTCCGGTCAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCg < 1:3063179/68‑1 (MQ=255) ttCAGCCATTATTGAATACCGAAGGTCCGGTCAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCg < 1:1362953/68‑1 (MQ=255) gCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaaga < 1:2565434/68‑1 (MQ=255) gCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaaga < 1:2696780/68‑1 (MQ=255) gCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaaga < 1:1346116/68‑1 (MQ=255) gCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaaga < 1:863651/68‑1 (MQ=255) gCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaaga < 1:1429718/68‑1 (MQ=255) gCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaaga < 1:1619204/68‑1 (MQ=255) gCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaaga < 1:3074387/68‑1 (MQ=255) gCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaaga < 1:1615601/68‑1 (MQ=255) ccGTTTTTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaagaa < 1:1154672/68‑1 (MQ=255) ccGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaagaa < 1:2504684/68‑1 (MQ=255) ccGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaagaa < 1:1779427/68‑1 (MQ=255) ccGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaagaa < 1:2607978/68‑1 (MQ=255) ccGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaagaa < 1:1510733/68‑1 (MQ=255) ccGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCgaaga < 1:1113906/67‑1 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:774439/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:1788819/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:709485/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:520871/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:1200591/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:2282599/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:3137782/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:1859499/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:2940162/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:281739/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:1438039/1‑69 (MQ=255) attaAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTgcg > 1:259949/1‑69 (MQ=255) | GTGAAACGCTTGATCCAGGAGCAGGCTGATGCCAGCCATTATTTCTCCGATGAGTTTCAGCCGTTATTAAATACCGAAGGTCCGGTGAAATATGTTCGCCCGGATGTCAGCCATTTTGAGGCGAAGAAACTGCG > minE/1533987‑1534120 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |