| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,550,810 | T→C | 38.3% | G86G (GGT→GGC) | yfdC → | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,550,810 | 0 | T | C | 38.3% | 41.5 / 56.5 | 86 | G86G (GGT→GGC) | yfdC | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (8/45); new base C (15/18); total (23/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.78e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
GCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATTATGGCCC > minE/1550745‑1550877 | gcggcgGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGgtgt > 1:1525518/1‑68 (MQ=255)gcggcgGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGtgtg > 1:2163412/1‑69 (MQ=255)gcggcgGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGtgtg > 1:939912/1‑69 (MQ=255)gcggcgGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGtgtg > 1:28000/1‑69 (MQ=255)gcggcgGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGtgtg > 1:1386294/1‑69 (MQ=255)gcggcgGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGtgtg > 1:2501647/1‑69 (MQ=255)gcggcgGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGtgtg > 1:1330927/1‑69 (MQ=255) tCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGcttc > 1:3244082/1‑69 (MQ=255) tCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGcttc > 1:2679552/1‑69 (MQ=255) gcTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGgag < 1:1584001/69‑1 (MQ=255) gcTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGgag < 1:660928/69‑1 (MQ=255) gcTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGgag < 1:1957808/69‑1 (MQ=255) gcTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGgag < 1:1291960/69‑1 (MQ=255) gcTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGgag < 1:1218015/69‑1 (MQ=255) gcTTCGCTACTGGCTAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:695285/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:604269/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:593811/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:2810388/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:2150240/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:2766676/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:147723/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:1582361/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:2473108/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:676892/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:1307864/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:891579/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:1199770/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:2567414/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:1115389/68‑1 (MQ=255) gcTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTCCTGga < 1:2379646/68‑1 (MQ=255) cTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGgag < 1:789191/68‑1 (MQ=255) cTTCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:616596/67‑1 (MQ=255) tCGCTACTGGCAAAAGGGATATTTCATGTCGAACTGGAAGGCGTGCCGGGCAGCTTCTTGCTGga < 1:5364/65‑1 (MQ=255) aCTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCgg < 1:3363098/69‑1 (MQ=255) aCTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCgg < 1:372422/69‑1 (MQ=255) aCTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCgg < 1:107377/69‑1 (MQ=255) aCTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCgg < 1:1559455/69‑1 (MQ=255) aCTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCgg < 1:1727716/69‑1 (MQ=255) aCTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCg > 1:2563690/1‑68 (MQ=255) tGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGt < 1:2777937/68‑1 (MQ=255) tGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGt < 1:59293/68‑1 (MQ=255) tGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGt < 1:2987560/68‑1 (MQ=255) tGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGt < 1:226229/68‑1 (MQ=255) ggCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTta < 1:869359/69‑1 (MQ=255) ggCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTta < 1:1139143/69‑1 (MQ=255) ggCAAAAGGGATATTTCAAGTAGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGgag < 1:1598831/58‑1 (MQ=255) aaaaGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTtat < 1:2771283/67‑1 (MQ=255) aaaaGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTtat < 1:791840/67‑1 (MQ=255) gATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTgg > 1:2595880/1‑69 (MQ=255) gATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTgg > 1:2235355/1‑69 (MQ=255) gATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTgg > 1:2034082/1‑69 (MQ=255) gATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTgg > 1:2446939/1‑69 (MQ=255) atTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGttt < 1:2537272/69‑1 (MQ=255) tCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGgag < 1:2058657/43‑1 (MQ=255) cAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTttatt > 1:504848/1‑69 (MQ=255) aaGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTttatt < 1:1349135/68‑1 (MQ=255) aaGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTttatt < 1:2726598/68‑1 (MQ=255) aaGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTttatt < 1:2821022/68‑1 (MQ=255) aaGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTttatt < 1:198742/68‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTTCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:1634701/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTTGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:2124906/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCac < 1:2689953/69‑2 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:640411/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:1430084/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:726718/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:777207/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:2091445/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:1309637/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:1205620/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:961416/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:387144/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:445787/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:2886648/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:2749630/69‑1 (MQ=255) aCTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:2325078/69‑1 (MQ=255) cTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCAt < 1:2229666/68‑1 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:249696/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:345640/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:2635119/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:934690/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:1285474/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:2643958/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:84827/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:1385748/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:727643/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:2325980/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:1906152/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:2931498/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:560643/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAtt > 1:3123191/1‑68 (MQ=255) gAAGGCGTGCCGGGCAGCGTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATAAt > 1:3074153/1‑68 (MQ=255) aaGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCgg < 1:470368/37‑1 (MQ=255) tgtgCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTc > 1:2308247/1‑58 (MQ=255) tgtgCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATTATGGccc > 1:2779465/1‑68 (MQ=255) tgtgCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATTATGGccc > 1:1386303/1‑68 (MQ=255) tgtgCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATTATGGccc > 1:2333404/1‑68 (MQ=255) tgtgCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATTATGGccc > 1:2495936/1‑68 (MQ=255) tgtgCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATTATGGccc > 1:2266139/1‑68 (MQ=255) tgtgCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATTATGGccc > 1:507574/1‑68 (MQ=255) tgtgCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATTATGGccc > 1:914905/1‑68 (MQ=255) | GCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTATTATCGTCATTATGGCCC > minE/1550745‑1550877 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |