| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,568,594 | A→C | 26.7% | T244T (ACT→ACG) | mntH ← | manganese/divalent cation transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,568,594 | 0 | A | C | 26.7% | 104.2 / 48.4 | 86 | T244T (ACT→ACG) | mntH | manganese/divalent cation transporter |
| Reads supporting (aligned to +/- strand): ref base A (30/33); new base C (14/9); total (44/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01 | |||||||||||
TGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTA > minE/1568529‑1568658 | tGACCGGAAAAGTGGAACGCCGCCTCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATATTc > 1:1918789/1‑69 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTGGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc > 1:1624205/1‑69 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc > 1:106767/1‑69 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc > 1:1082840/1‑69 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc < 1:637352/69‑1 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc < 1:3301356/69‑1 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc > 1:2570421/1‑69 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc < 1:1199127/69‑1 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc > 1:2562181/1‑69 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc < 1:2162344/69‑1 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc < 1:2085217/69‑1 (MQ=255)tGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc > 1:196600/1‑69 (MQ=255) gACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc < 1:258586/68‑1 (MQ=255) gACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTc < 1:822646/68‑1 (MQ=255) aCCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCAt > 1:717458/1‑69 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:2467142/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:3407799/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:514709/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:2747199/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:100905/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:1201065/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:763846/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:826579/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:2211607/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:863472/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:122337/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:2136709/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:2037509/1‑67 (MQ=255) aaaaGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGc > 1:956618/1‑67 (MQ=255) gcAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGCGATAGCCACATCCCATTtg < 1:1259417/69‑1 (MQ=255) gcAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGCGATAGCCACATCCCATTtg < 1:3418465/69‑1 (MQ=255) gcAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGCGATAGCCACATCCCATTtg < 1:1151637/69‑1 (MQ=255) gcAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGCGATAGCCACATCCCATTtg < 1:242075/69‑1 (MQ=255) gcAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGCGATAGCCACATCCCATTtg < 1:1914699/69‑1 (MQ=255) gcAGCTGTAGCCATCATCGCCAGATTGACAAAAACGGCAATCGTCATGGCGATAGCCACATCCCATTtg < 1:1100645/69‑1 (MQ=255) cAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGCGATAGCCACATCCCATTtg < 1:3064718/68‑1 (MQ=255) cAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATCGTCATGGCGATAGCCACATCCCATTtg < 1:678581/68‑1 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:1642593/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:1342809/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:3431178/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:2965104/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:1439098/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:2840292/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:627241/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:1450213/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:2752904/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:184922/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:68436/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:1711611/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:1738735/1‑68 (MQ=255) gCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGa > 1:2482578/1‑68 (MQ=255) tcatcGCCAGATTGACAAAACCGGCAATAGTCATGGc > 1:1085626/1‑37 (MQ=255) tcatcGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAAc > 1:16699/1‑69 (MQ=255) tcatcGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAAc > 1:1745787/1‑69 (MQ=255) tcatcGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAAc > 1:1382604/1‑69 (MQ=255) tcatcGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAAc > 1:955782/1‑69 (MQ=255) tcatcGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAAc > 1:829354/1‑69 (MQ=255) cGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACgtt < 1:284237/68‑1 (MQ=255) gCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACgttgt < 1:2682376/69‑1 (MQ=255) gCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACgttgt < 1:1744958/69‑1 (MQ=255) gCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACgttgt < 1:2911418/69‑1 (MQ=255) gCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACgttgt < 1:3296876/69‑1 (MQ=255) gCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACgttg > 1:2771702/1‑68 (MQ=255) gCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACgttg > 1:1165698/1‑68 (MQ=255) aGATTGACAAAACCGGCAATCGTCATGGCGATAGCCACATCCCATTtg < 1:53476/48‑1 (MQ=255) aaCCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGc < 1:3363563/69‑1 (MQ=255) aaCCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGc < 1:2168795/69‑1 (MQ=255) aaCCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGc < 1:764515/69‑1 (MQ=255) aaCCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGc < 1:2826194/69‑1 (MQ=255) aaCCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGc < 1:254123/69‑1 (MQ=255) ccGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGc < 1:2449491/67‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:3307361/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:1927537/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:24205/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:2451411/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:2604778/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:2682725/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:674195/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:2699389/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:616842/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:544457/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:527661/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:2923455/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:486737/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:3059103/69‑1 (MQ=255) cAATAGTCATGGCGATAGCCACATCCCATTTCGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTa < 1:1585937/69‑1 (MQ=255) | TGACCGGAAAAGTGGAACGCCGCCGCAGCTGTAGCCATCATCGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTA > minE/1568529‑1568658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |