| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,570,332 | C→T | 50.5% | I224I (ATC→ATT) | nupC → | nucleoside (except guanosine) transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,570,332 | 0 | C | T | 50.5% | ‑6.0 / 175.0 | 182 | I224I (ATC→ATT) | nupC | nucleoside (except guanosine) transporter |
| Reads supporting (aligned to +/- strand): ref base C (39/51); new base T (40/52); total (79/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 182 total aligned reads displayed.
GTTCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAC > minE/1570266‑1570386 | gTTCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCa < 1:2822788/69‑1 (MQ=255)gTTCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCa < 1:1556971/69‑1 (MQ=255)gTTCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCa < 1:1361569/69‑1 (MQ=255)gTTCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCa < 1:1678301/69‑1 (MQ=255)gTTCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCa < 1:1118727/69‑1 (MQ=255) ttCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAg > 1:3364413/1‑69 (MQ=255) ttCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAg > 1:1297819/1‑69 (MQ=255) ttCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAg > 1:428632/1‑69 (MQ=255) ttCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAg > 1:1410435/1‑69 (MQ=255) ttCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAg > 1:1018179/1‑69 (MQ=255) ttCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGACAGTGAAGAAAACATCCAg > 1:3097989/1‑69 (MQ=255) aGCACCTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATg > 1:33838/1‑69 (MQ=255) aGCACCTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATg > 1:2956118/1‑69 (MQ=255) aGCACCTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATg > 1:1023400/1‑69 (MQ=255) aGCACCTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATg > 1:2663359/1‑69 (MQ=255) aGCACCTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATg > 1:2496985/1‑69 (MQ=255) aGCACCTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATg > 1:1989462/1‑69 (MQ=255) aGCACCTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATg > 1:759378/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTcc > 1:166976/1‑68 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:1179178/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:2599765/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:2696631/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:2763594/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:2880711/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:2285696/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:1887057/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:201027/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:3055359/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:3430138/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:1291088/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:1091126/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:600484/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:1081479/1‑69 (MQ=255) ccTTTATCGTGCTGTCGCTGATCAACCCTTACCGTGTTGATGCCAGTGAAGAAAACATTCAGATGTCCa > 1:2428437/1‑69 (MQ=255) tGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCag < 1:772826/68‑1 (MQ=255) tGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCag < 1:3039824/68‑1 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGctt > 1:1506686/1‑69 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGctt > 1:219987/1‑69 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGctt > 1:234030/1‑69 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGctt > 1:2364234/1‑69 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGctt > 1:2905855/1‑69 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGctt > 1:382815/1‑69 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGct < 1:1427041/68‑1 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGct < 1:655277/68‑1 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGct < 1:2113273/68‑1 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGct < 1:3085585/68‑1 (MQ=255) cAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGct < 1:1319421/68‑1 (MQ=255) tACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGa < 1:985784/68‑1 (MQ=255) tACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGa < 1:2013600/68‑1 (MQ=255) tACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGa < 1:2869619/68‑1 (MQ=255) tACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGa < 1:2776596/68‑1 (MQ=255) gtgtTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATg < 1:174332/68‑1 (MQ=255) ttGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTgg > 1:368963/1‑69 (MQ=255) ttGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTgg > 1:3398433/1‑69 (MQ=255) ttGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTgg > 1:252129/1‑69 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACGTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:1766720/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTTCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:2580641/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGcttc < 1:2120700/52‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGcttc < 1:2727508/52‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGcttc < 1:3335009/52‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGcttc < 1:280326/52‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGcttc < 1:569519/52‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGcttc < 1:1850787/52‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGcttc < 1:183336/52‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:2072613/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:1726594/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:1351023/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:3183766/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:31322/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:2173658/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:809932/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:1204470/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:811901/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:1957396/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:1966066/68‑1 (MQ=255) tGCCAGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:2657733/68‑1 (MQ=255) aGTGAAGAAAGCATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:1234786/69‑1 (MQ=255) aGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:146728/69‑1 (MQ=255) aGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:2165161/69‑1 (MQ=255) aGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:902967/69‑1 (MQ=255) aGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:1160920/69‑1 (MQ=255) aGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:2487263/69‑1 (MQ=255) aGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:1996317/69‑1 (MQ=255) aGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:193206/69‑1 (MQ=255) aGTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:2530104/69‑1 (MQ=255) aGTCAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:3074196/69‑1 (MQ=255) gTGAAGAAAACATTCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAc < 1:224318/68‑1 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTg > 1:3154774/1‑57 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTg > 1:3229701/1‑57 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTg > 1:853287/1‑57 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTg > 1:969251/1‑57 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg > 1:1605607/1‑61 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg > 1:700446/1‑61 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:2284275/61‑1 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg > 1:3320701/1‑61 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg > 1:1273407/1‑61 (MQ=255) gaagaaAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTg < 1:3417726/61‑1 (MQ=255) aCATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGa < 1:661561/43‑1 (MQ=255) aCATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGa < 1:718781/43‑1 (MQ=255) aCATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGa < 1:1142784/43‑1 (MQ=255) | GTTCAGCACCTTTATCGTGCTGTCGCTGATCAATCCTTACCGTGTTGATGCCAGTGAAGAAAACATCCAGATGTCCAACCTGCACGAAGGTCAGAGCTTCTTCGAAATGCTGGGTGAATAC > minE/1570266‑1570386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |