| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,577,658 | T→C | 32.7% | G93G (GGA→GGG) | xapA ← | purine nucleoside phosphorylase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,577,658 | 0 | T | C | 32.7% | 45.6 / 30.4 | 61 | G93G (GGA→GGG) | xapA | purine nucleoside phosphorylase II |
| Reads supporting (aligned to +/- strand): ref base T (10/31); new base C (6/14); total (16/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACAGTAGCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGCCCTGGAGATGG > minE/1577600‑1577721 | aCAGTAGCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCtt < 1:2942397/69‑1 (MQ=255)aCAGTAGCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCtt < 1:2500457/69‑1 (MQ=255)aCAGTAGCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCtt < 1:2864327/69‑1 (MQ=255)aCAGTAGCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCtt < 1:2649441/69‑1 (MQ=255)aCAGTAGCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCtt < 1:2850299/69‑1 (MQ=255)aCAGTAGCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCtt < 1:1537908/69‑1 (MQ=255)aCAGTAGCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCtt < 1:2660104/69‑1 (MQ=255) tcTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGa < 1:2058758/68‑1 (MQ=255) gCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGa < 1:500370/69‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:3136085/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:533281/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:470521/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:1968899/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:1672377/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:2756534/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:1483195/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:1434304/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:956046/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:1286382/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:3129046/68‑1 (MQ=255) acTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:1114913/68‑1 (MQ=255) acTCGCAGCCCACCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:3119312/68‑1 (MQ=255) cTCGCAGCCCAGCAACTTAAAGGTACGGATTGCATCCGTCATGATGGTCATCCCACGACCTTCGTAGa < 1:346590/68‑1 (MQ=255) tCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGa < 1:801404/67‑1 (MQ=255) gcagcTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGAc < 1:985368/69‑1 (MQ=255) gcagcTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGAc < 1:1201954/69‑1 (MQ=255) gcagcTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGAc < 1:182667/69‑1 (MQ=255) gcagcTTAAAGGTACGAATTGCGTCAGTCATAATGGGCATTCCACGACCTTCGTAGAAATGTCCGCGAc < 1:411253/69‑1 (MQ=255) cTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCttt < 1:2366548/69‑1 (MQ=255) cTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCttt < 1:1523376/69‑1 (MQ=255) aGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTcata < 1:195012/68‑1 (MQ=255) aGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTcata < 1:3253432/68‑1 (MQ=255) aGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTcata < 1:981849/68‑1 (MQ=255) ggTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTcata < 1:2095732/67‑1 (MQ=255) ggTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTcata < 1:742293/67‑1 (MQ=255) tACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCttt > 1:221260/1‑61 (MQ=255) tACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCttt > 1:2439525/1‑61 (MQ=255) tACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCttt > 1:3008061/1‑61 (MQ=255) cGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCttt < 1:899445/59‑1 (MQ=255) gCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGt > 1:642171/1‑69 (MQ=255) tcagtcaTAATGGTCATTCCACGACCTTCGTAGAAATGt > 1:967670/1‑39 (MQ=255) tcagtcaTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGCCCTTTCATACATACCACCGGTACg > 1:1587490/1‑69 (MQ=255) tcagtcaTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACg > 1:2551322/1‑69 (MQ=255) tcagtcaTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACg > 1:826590/1‑69 (MQ=255) tcagtcaTAATGGTCATTCCACGACCTTCGTAGAAATGT‑CGCGACCTTTCATACATACCACCGGTACGc < 1:275711/69‑1 (MQ=255) cagtcaTAATGTTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGc < 1:2460676/69‑1 (MQ=255) cagtcaTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGc < 1:787502/69‑1 (MQ=255) cagtcaTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGc < 1:1001092/69‑1 (MQ=255) cagtcaTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGc < 1:3264091/69‑1 (MQ=255) cagtcaTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGc < 1:2312264/69‑1 (MQ=255) cgtcaTGATGGTCATCCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACACGCCACTGGCAcccc > 1:3031274/2‑69 (MQ=255) cgtcaTGATGGTCATCCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACACGCCACTGGCAcccc > 1:2760857/2‑69 (MQ=255) cgtcaTGATGGTCATCCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACACGCCACTGGCAcccc > 1:3379435/2‑69 (MQ=255) cgtcaTGATGGTCATCCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACACGCCACTGGCAcccc > 1:365099/2‑69 (MQ=255) cgtcaTGATGGTCATCCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACACGCCACTGGCAcccc > 1:962384/2‑69 (MQ=255) cgtcaTGATGGTCATCCCAAGACCTTCGTAGAAATGTCCGCGACCTTTCATACACGCCACTGGCAcccc > 1:273404/2‑69 (MQ=255) agtcaTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGc < 1:1638485/68‑1 (MQ=255) agtcaTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGc < 1:2120887/68‑1 (MQ=255) aTAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGccc > 1:635384/1‑66 (MQ=255) tCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGCCCTGGAGATgg > 1:2593684/1‑68 (MQ=255) aTTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGc < 1:2293681/55‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:1363106/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:1282952/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:1207240/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:91263/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:1052151/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:882873/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:2086762/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:2104535/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:645169/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:616405/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:2664011/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:2935748/35‑1 (MQ=255) tCCACGACCTTCGTAGAAATGTCCGCGACCTTTca < 1:3018278/35‑1 (MQ=255) | ACAGTAGCTCGCAGCCCAGCAGCTTAAAGGTACGAATTGCGTCAGTCATAATGGTCATTCCACGACCTTCGTAGAAATGTCCGCGACCTTTCATACATACCACCGGTACGCCCTGGAGATGG > minE/1577600‑1577721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |