| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,609,762 | T→C | 43.7% | T198T (ACA→ACG) | eutC ← | ethanolamine ammonia‑lyase, small subunit (light chain) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,609,762 | 0 | T | C | 43.7% | 12.2 / 48.7 | 64 | T198T (ACA→ACG) | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) |
| Reads supporting (aligned to +/- strand): ref base T (17/19); new base C (3/25); total (20/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.44e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCACCGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGCCCGCCATCAGCGGTGGC > minE/1609711‑1609810 | ctcACCGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGccc > 1:2700588/1‑69 (MQ=255)ctcACCGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGccc > 1:2027748/1‑69 (MQ=255)ctcACCGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGccc > 1:1809663/1‑69 (MQ=255)ctcACCGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGccc > 1:2634039/1‑69 (MQ=255) aCCGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGc > 1:2479963/1‑69 (MQ=255) aCCGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGc > 1:2281939/1‑69 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:882118/69‑1 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:2964260/69‑1 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:1718466/69‑1 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:239113/69‑1 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:1544919/69‑1 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:1492850/69‑1 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:1463393/69‑1 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:820452/69‑1 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:1362597/69‑1 (MQ=255) cGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:1273264/69‑1 (MQ=255) gatctgatctTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:396515/68‑1 (MQ=255) atcttcaatcttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAg > 1:2408053/1‑69 (MQ=255) atcttcaatcttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAg > 1:510371/1‑69 (MQ=255) atcttcaatcttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAg > 1:40782/1‑69 (MQ=255) cttcaatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGt < 1:2610546/62‑1 (MQ=255) cttcaatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGt < 1:2532493/62‑1 (MQ=255) cttcaatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGt < 1:3065587/62‑1 (MQ=255) cttcaatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGt < 1:1705113/62‑1 (MQ=255) cttcaatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGt < 1:374880/62‑1 (MQ=255) cttcaatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAgg > 1:919867/1‑68 (MQ=255) cttcaatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGc > 1:3042205/1‑69 (MQ=255) ttcaatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGt < 1:2937952/61‑1 (MQ=255) caatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTc > 1:2121026/1‑62 (MQ=255) caatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGccc > 1:628993/1‑68 (MQ=255) caatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGccc > 1:1259770/1‑68 (MQ=255) caatcttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGccc > 1:2182979/1‑68 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:3122675/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:3029553/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:366460/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:3244234/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:2274686/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:2785520/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:2094780/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:657807/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:681650/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:1559236/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:1297474/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:1175814/69‑1 (MQ=255) cttcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:1001378/69‑1 (MQ=255) cttcaCGCGACCATAACATACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:2685841/69‑1 (MQ=255) ttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGCCCGCCATc > 1:1030650/1‑69 (MQ=255) ttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGCCCGCCATc > 1:680004/1‑69 (MQ=255) ttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGCCCGCCATc > 1:2290453/1‑69 (MQ=255) ttcaCGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGCCCGCCATc > 1:1926970/1‑69 (MQ=255) tcaCGCGACCATAACGTACAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCAt < 1:3042524/67‑1 (MQ=255) cATAACGAACAAAGAATGGTGTACC‑ACTTTCAGCCCGGCCTGt < 1:1458480/43‑1 (MQ=38) tAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCt < 1:1638221/40‑1 (MQ=255) aCGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGCCCGCCATCAGCGGt > 1:834728/1‑61 (MQ=255) cgtaCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:3287852/60‑1 (MQ=255) cgtaCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:3408091/60‑1 (MQ=255) cgtaCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:3238224/60‑1 (MQ=255) cgtaCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:2856868/60‑1 (MQ=255) cgtaCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:2747526/60‑1 (MQ=255) cgtaCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:177821/60‑1 (MQ=255) cgtaCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:1253697/60‑1 (MQ=255) cgtaCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:1238814/60‑1 (MQ=255) cgtaCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:927461/60‑1 (MQ=255) taCAAAGAATGGCGTACCGACTTTCAGCCCGGCTTGCTTCAGGCCCGCCATCAGCggcggc < 1:249569/60‑1 (MQ=255) | CTCACCGATCTGATCTTCAATCTTCACGCGACCATAACGAACAAAGAATGGTGTACCGACTTTCAGCCCGGCCTGTTTCAGGCCCGCCATCAGCGGTGGC > minE/1609711‑1609810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |