Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,625,674 A→G 38.6% L247L (TTA→TTG talA → transaldolase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,625,6740AG38.6% 25.2 / 36.5 57L247L (TTA→TTGtalAtransaldolase A
Reads supporting (aligned to +/- strand):  ref base A (7/28);  new base G (13/9);  total (20/37)
Fisher's exact test for biased strand distribution p-value = 4.18e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGCTTCCGTCGCACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCACCTTCT  >  minE/1625606‑1625731
                                                                    |                                                         
aGCTTCCGTCGCACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTa                                                           >  1:1098582/1‑69 (MQ=255)
          gCACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGa                                                       <  1:2921297/63‑1 (MQ=255)
          gCACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGa                                                       <  1:3314076/63‑1 (MQ=255)
          gCACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGa                                                       <  1:430049/63‑1 (MQ=255)
          gCACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGa                                                       <  1:891787/63‑1 (MQ=255)
          gCACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGa                                                       <  1:583732/63‑1 (MQ=255)
           cACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGa                                                       <  1:2724965/62‑1 (MQ=255)
                  cAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGa                                          >  1:893354/1‑68 (MQ=255)
                    aaTCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAgg                                                    <  1:975034/56‑1 (MQ=255)
                    aaTCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAgg                                                    <  1:112593/56‑1 (MQ=255)
                    aaTCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAgg                                                    <  1:295555/56‑1 (MQ=255)
                    aaTCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAgg                                                    <  1:1363428/56‑1 (MQ=255)
                    aaTCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAgg                                                    <  1:64014/56‑1 (MQ=255)
                    aaTCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTCAAgg                                                    <  1:1000113/56‑1 (MQ=255)
                        cTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGt                                    <  1:2171118/68‑1 (MQ=255)
                             cTTAACCGGCTGCGACCGACTGACTATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGcc                              <  1:1452148/69‑1 (MQ=38)
                             cTTAACCGGCTGCGACCGACTGACTATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGcc                              <  1:696296/69‑1 (MQ=38)
                             cTTAACCGGCTGCGACCGACTGACTATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGcc                              <  1:80998/69‑1 (MQ=38)
                             cTTAACCGGCTGCGACCGACTGACTATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGcc                              <  1:1267816/69‑1 (MQ=38)
                             cTTAACCGGCTGCGACCGACTGACTATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGcc                              <  1:3311216/69‑1 (MQ=38)
                             cTTAACCGGCTGCGACCGACTGACTATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGcc                              <  1:3252421/69‑1 (MQ=38)
                             cTTAACCGGCTGCGACCGACTGACTATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGcc                              <  1:2298231/69‑1 (MQ=38)
                             cTTAACCGGCTGCGACCGACTGACTATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGcc                              <  1:1165466/69‑1 (MQ=38)
                             cTTAACCGGCTGCGACCGACTGACTATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGcc                              <  1:1084521/69‑1 (MQ=38)
                                      cTGCGATCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACg                     <  1:1257599/69‑1 (MQ=255)
                                      cTGCGATCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACg                     <  1:2200530/69‑1 (MQ=255)
                                       tGCGATCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACg                     <  1:3101339/68‑1 (MQ=255)
                                            tCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAAtt               <  1:3356215/69‑1 (MQ=255)
                                            tCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAAtt               <  1:1068485/69‑1 (MQ=255)
                                             cGACTTACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTa              <  1:127947/69‑1 (MQ=255)
                                             cGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTa              >  1:1114997/1‑69 (MQ=255)
                                             cGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTa              <  1:1208348/69‑1 (MQ=255)
                                             cGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTa              <  1:3301760/69‑1 (MQ=255)
                                             cGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTa              <  1:557080/69‑1 (MQ=255)
                                             cGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTa              <  1:369828/69‑1 (MQ=255)
                                              gactgactATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTa              <  1:2740843/68‑1 (MQ=255)
                                              gactgactATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTa              <  1:2864003/68‑1 (MQ=255)
                                                  gactATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATccc         <  1:2321562/69‑1 (MQ=255)
                                                  gactATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATccc         <  1:3236972/69‑1 (MQ=255)
                                                  gactATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATccc         <  1:3240913/69‑1 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:3311762/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:643989/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:167965/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:1929701/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:47712/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:2121087/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:2194285/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:2670825/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:2222553/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:3307421/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:225377/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:3129412/1‑69 (MQ=255)
                                                    ctATCGCACCGAATTTGCTGAAGGAGCTACAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCAc       >  1:25490/1‑69 (MQ=255)
                                                         gCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCACCtt    >  1:2022624/1‑67 (MQ=255)
                                                         gCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCACCtt    >  1:1428539/1‑67 (MQ=255)
                                                         gCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCACCtt    >  1:2415937/1‑67 (MQ=255)
                                                         gCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCACCtt    >  1:2439038/1‑67 (MQ=255)
                                                           aCCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCACCTtct  >  1:1271889/1‑67 (MQ=255)
                                                                    |                                                         
AGCTTCCGTCGCACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCACCTTCT  >  minE/1625606‑1625731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: