| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,697,000 | T→C | 24.3% | intergenic (+69/‑49) | suhB → / → yfhR | inositol monophosphatase/predicted peptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,697,000 | 0 | T | C | 24.3% | 99.9 / 27.1 | 82 | intergenic (+69/‑49) | suhB/yfhR | inositol monophosphatase/predicted peptidase |
| Reads supporting (aligned to +/- strand): ref base T (51/11); new base C (2/18); total (53/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.85e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCA > minE/1696941‑1697065 | cGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActt < 1:2223107/69‑1 (MQ=255)cGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActt < 1:1803772/69‑1 (MQ=255)cGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActt < 1:2695633/69‑1 (MQ=255)cGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActt < 1:1719741/69‑1 (MQ=255)cGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActt < 1:1430800/69‑1 (MQ=255) gggTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActt < 1:2448408/68‑1 (MQ=255) gggTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACCGCTTTActtt > 1:1971720/1‑69 (MQ=255) gggTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACCGCTTTActtt > 1:610091/1‑69 (MQ=255) atatCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTActttcttt > 1:210566/1‑68 (MQ=255) actcacCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCAc > 1:2881321/1‑69 (MQ=255) cGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCccac > 1:433648/1‑64 (MQ=255) cGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCt > 1:1876239/1‑69 (MQ=255) cTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTc > 1:764381/1‑69 (MQ=255) cTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTc > 1:520659/1‑69 (MQ=255) cTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTc > 1:1651154/1‑69 (MQ=255) cTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTc > 1:2673568/1‑69 (MQ=255) cTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTc > 1:3270538/1‑69 (MQ=255) cTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTc > 1:1085860/1‑69 (MQ=255) cTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTc > 1:2889323/1‑69 (MQ=255) cTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTc > 1:287214/1‑69 (MQ=255) gcgcTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGAtt < 1:2632326/69‑1 (MQ=255) gcgcTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGAtt < 1:1167751/69‑1 (MQ=255) gcgcTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGAtt < 1:135250/69‑1 (MQ=255) gcgcTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGAtt < 1:1463894/69‑1 (MQ=255) gcgcTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGAtt < 1:1660145/69‑1 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCActct > 1:1803398/1‑41 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:239180/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:2471105/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:2677562/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:2947331/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:380794/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:3114826/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:3234106/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:3369562/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:909604/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:1857111/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:1228546/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:678565/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:1674782/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:1352218/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:70712/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:1099123/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:931618/1‑43 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:324382/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:1128737/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:2958457/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:1038741/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:555368/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:1018428/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:3307158/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:3309525/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:3406489/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:2700161/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:1479/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:790806/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:156393/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:3409139/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:160532/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:2469760/1‑68 (MQ=255) ccGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGgat > 1:2170961/1‑68 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTGCCCGATTAATgg < 1:2245017/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:573220/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:942260/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:1760555/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:1035072/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:1174729/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:1551639/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:1601003/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:166203/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:3382428/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:176223/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:1794021/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:2102672/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:2222977/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:2242322/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:2534088/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:2549115/66‑1 (MQ=255) ccGAAATACTTCCTCACCGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATgg < 1:3330154/66‑1 (MQ=255) ccGAAATACTTACTCACTGCTTTACTTTCTTTCGTCACTCTcc > 1:702700/1‑43 (MQ=255) ccTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAaagaag > 1:681604/1‑67 (MQ=255) ccTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGt > 1:1079835/1‑68 (MQ=255) cACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCa > 1:860191/1‑69 (MQ=255) | CGGGTGATATCACTCACCCGCCCTCGCCTTTCAGGCGCTATTCCGAAATACTTCCTCACTGCTTTACTTTCTTTCGTCACTCTCCCACCATCTTTCCCCGATTAATGGATGATAAAGAAGTCGCA > minE/1696941‑1697065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |