| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,781,672 | C→T | 16.7% | N41N (AAC→AAT) | yfjD → | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,781,672 | 0 | C | T | 16.7% | 148.8 / 15.6 | 89 | N41N (AAC→AAT) | yfjD | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (18/56); new base T (7/8); total (25/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.19e-01 | |||||||||||
CGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGC > minE/1781612‑1781738 | cgTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCaa < 1:2739296/69‑1 (MQ=255) cGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAatat < 1:436996/69‑1 (MQ=255) cGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAatat < 1:2892819/69‑1 (MQ=255) cGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAatat < 1:2923340/69‑1 (MQ=255) cGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAatat < 1:1937653/69‑1 (MQ=255) cGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAatat < 1:1781817/69‑1 (MQ=255) cGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAatat < 1:1487119/69‑1 (MQ=255) cGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAatat < 1:1191337/69‑1 (MQ=255) gAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATAtt < 1:1403515/69‑1 (MQ=255) gAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATAtt < 1:1298126/69‑1 (MQ=255) gAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATAtt < 1:1446769/69‑1 (MQ=255) gAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATAtt < 1:328320/69‑1 (MQ=255) gAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATAtt < 1:2413440/69‑1 (MQ=255) aataaTTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAatat < 1:2364394/64‑1 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTg > 1:2543062/1‑44 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTg > 1:1964919/1‑44 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTg > 1:1996059/1‑44 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTg > 1:418625/1‑44 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTg > 1:33349/1‑44 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTg > 1:771960/1‑44 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTc < 1:434376/47‑1 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTc < 1:229876/47‑1 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTc < 1:2284979/47‑1 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTc < 1:2705152/47‑1 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTc < 1:2779239/47‑1 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTc < 1:3065988/47‑1 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTc < 1:499907/47‑1 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTc < 1:12464/47‑1 (MQ=255) aGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTc < 1:1866111/47‑1 (MQ=255) aGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:1926195/69‑1 (MQ=255) aGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:1447130/69‑1 (MQ=255) aGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:2527170/69‑1 (MQ=255) aGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:2515442/69‑1 (MQ=255) aGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:3330570/69‑1 (MQ=255) aGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:73585/69‑1 (MQ=255) aGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:1233766/69‑1 (MQ=255) gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:62715/68‑1 (MQ=255) gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:790044/68‑1 (MQ=255) gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:3415152/68‑1 (MQ=255) gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCAc < 1:1915364/68‑1 (MQ=255) gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACt < 1:141617/69‑1 (MQ=255) gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACt < 1:720225/69‑1 (MQ=255) gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACt < 1:1568876/69‑1 (MQ=255) gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACt < 1:1150781/69‑1 (MQ=255) gACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACt < 1:1425186/69‑1 (MQ=255) cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGTCACTAttgtt < 1:2981319/69‑1 (MQ=255) cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTAttgtt < 1:2844175/69‑1 (MQ=255) cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTAttgtt < 1:1426249/69‑1 (MQ=255) cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTAttgtt < 1:142868/69‑1 (MQ=255) cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTAttgtt < 1:3250214/69‑1 (MQ=255) cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTAttgtt < 1:2577819/69‑1 (MQ=255) cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTAttgtt < 1:1908303/69‑1 (MQ=255) cTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTAttgtt < 1:795239/69‑1 (MQ=255) tAAGCCTGGTGTTAATCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGc > 1:2427475/1‑56 (MQ=37) tAAGCCTGGTGTTAATCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCggg > 1:2574209/1‑68 (MQ=255) tAAGCCTGGTGTTAATCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGa > 1:1077078/1‑69 (MQ=255) tAAGCCTGGTGTTAATCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGa > 1:562729/1‑69 (MQ=255) tAAGCCTGGTGTTAATCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGa > 1:358299/1‑69 (MQ=255) tAAGCCTGGTGTTAATCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGa > 1:1910621/1‑69 (MQ=255) tAAGCCTGGTGTTAATCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGa > 1:2081009/1‑69 (MQ=255) aaGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGAt > 1:206445/1‑69 (MQ=255) aaGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGAt > 1:1487992/1‑69 (MQ=255) aaGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGAt > 1:2650515/1‑69 (MQ=255) ttAATCGGCAATAACCTGGTCAATATTCTTGCCTc > 1:615845/1‑35 (MQ=255) ttAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTAc > 1:1378778/1‑69 (MQ=255) ttAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTAc > 1:2387500/1‑69 (MQ=255) tCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGATGCGCTTGTATGGc < 1:194329/68‑1 (MQ=255) tCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGATGCGCTTGTATGGc < 1:1895089/68‑1 (MQ=255) tCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGATGCGCTTGTATGGc < 1:635200/68‑1 (MQ=255) tCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGATGCGCTTGTATGGc < 1:675052/68‑1 (MQ=255) tCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGATGCGCTTGTATGGc < 1:2835426/68‑1 (MQ=255) tCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGATGCGCTTGTATGGc < 1:3033260/68‑1 (MQ=255) tCGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGATGCGCTTGTATGGc < 1:964196/68‑1 (MQ=255) cGGCAATAATCTGGTCAATATCCTTGCTTCCGCACTCGGCACTATTGTCGGGATGCGCTTGTATGGc < 1:3029205/67‑1 (MQ=255) ggCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGAt > 1:2041821/1‑69 (MQ=255) aaCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGc > 1:1583131/1‑69 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg < 1:2883012/67‑1 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg > 1:505960/1‑67 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg < 1:552721/67‑1 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg < 1:419064/67‑1 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg < 1:2233189/67‑1 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg < 1:187804/67‑1 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg < 1:2505300/67‑1 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg > 1:2692847/1‑67 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg < 1:3083514/67‑1 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg < 1:2846702/67‑1 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg > 1:12834/1‑67 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg < 1:1066511/67‑1 (MQ=255) aCCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCggg > 1:2963043/1‑67 (MQ=255) | CGTCGAAAAATTGCTGCGTAAGCCAGACCGCCTGATAAGCCTGGTGTTAATCGGCAATAACCTGGTCAATATTCTTGCCTCCGCGCTCGGCACTATTGTTGGGATGCGTTTGTACGGCGATGCGGGC > minE/1781612‑1781738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |