| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,798,738 | C→T | 9.9% | L253L (CTC→CTT) | proV → | glycine betaine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,798,738 | 0 | C | T | 9.9% | 223.2 / 7.4 | 109 | L253L (CTC→CTT) | proV | glycine betaine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (47/51); new base T (9/2); total (56/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.33e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01 | |||||||||||
Only 100 of 113 total aligned reads displayed.
TTGGCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAG > minE/1798671‑1798803 | ttGGCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATtctc > 1:2137611/1‑68 (MQ=255)ttGGCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATtctc > 1:2334919/1‑68 (MQ=255) ggCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCaat > 1:2006415/1‑69 (MQ=255) ggCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCaat > 1:1446099/1‑69 (MQ=255) ggCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCaat > 1:1797937/1‑69 (MQ=255) ggCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCaat > 1:1196595/1‑69 (MQ=255) gACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCaataat < 1:2372273/69‑1 (MQ=255) gACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCaataat < 1:2805670/69‑1 (MQ=255) gACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCaataat < 1:3199384/69‑1 (MQ=255) gACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCaataat < 1:1849851/69‑1 (MQ=255) aTTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCg < 1:1637434/69‑1 (MQ=255) aTTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCg < 1:1248709/69‑1 (MQ=255) aTTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCg < 1:736476/69‑1 (MQ=255) tttATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:3062687/66‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:2577422/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:2470118/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:1504006/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:2474053/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:1060579/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:684965/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:3290055/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:3066600/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:132832/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:2884445/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:3185744/65‑1 (MQ=255) tATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:2946114/65‑1 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCaataat > 1:2412195/1‑54 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGaa > 1:2043969/1‑62 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTa > 1:1673049/1‑68 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTa > 1:2386065/1‑68 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTAt > 1:379313/1‑69 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTAt > 1:415760/1‑69 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTAt > 1:2981870/1‑69 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTAt > 1:2084272/1‑69 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTAt > 1:2472929/1‑69 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTAt > 1:2786421/1‑69 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTAt > 1:62744/1‑69 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTAt > 1:744454/1‑69 (MQ=255) aTGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTAt > 1:1712694/1‑69 (MQ=255) aTGGTGAAGTGGTACAGGTCGGCACCCCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:1490224/1‑69 (MQ=255) aTGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:200454/1‑69 (MQ=255) aTGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:1585516/1‑69 (MQ=255) aTGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:2098361/1‑69 (MQ=255) aTGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:1108219/1‑69 (MQ=255) gTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:3055171/54‑1 (MQ=255) tGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:1500294/53‑1 (MQ=255) gTGGTACAGGTTGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2208047/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGt > 1:338126/1‑60 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACcttctt > 1:1379168/1‑68 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:3051825/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2746942/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2308075/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2930697/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2581030/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:1114292/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:1554601/1‑69 (MQ=255) ggTACAGGTCGGCACACCGGATGAAATTCTCaataaa > 1:1819377/1‑36 (MQ=255) ggTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCg > 1:2123881/1‑69 (MQ=255) ggTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCg > 1:476301/1‑69 (MQ=255) ggTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCg > 1:165504/1‑69 (MQ=255) tACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATg < 1:3355812/45‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1281284/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1116361/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1983349/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1427428/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1619030/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1922830/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1676144/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:2073258/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1762318/69‑1 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCg > 1:3124045/1‑51 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCa > 1:3127500/1‑69 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCa > 1:2103837/1‑69 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCa > 1:3006026/1‑69 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCa > 1:2914025/1‑69 (MQ=255) aTGAAATTCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGtc < 1:2961118/56‑2 (MQ=39) tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCg < 1:2161050/53‑1 (MQ=255) tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCg < 1:1160785/53‑1 (MQ=255) tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCg < 1:1363036/53‑1 (MQ=255) tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCg < 1:2476254/53‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:2336749/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:3056952/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:137500/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:1453018/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:1527549/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:2269534/69‑1 (MQ=255) aaaTTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:3179727/68‑1 (MQ=255) aaaTTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:2565709/68‑1 (MQ=255) aTTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTc < 1:779985/69‑1 (MQ=255) aTTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTc < 1:596212/69‑1 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTTGCGTCGATATTAGCCAGGTGTTCa > 1:405852/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:389718/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:1009403/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:249475/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:3350898/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:3347082/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:1391489/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:1078269/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:2862477/1‑69 (MQ=255) tctcAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAg > 1:2840694/1‑69 (MQ=255) | TTGGCGACCGAATTGCCATTATGCAAAATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAG > minE/1798671‑1798803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |