| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,798,765 | T→A | 13.5% | R262R (CGT→CGA) | proV → | glycine betaine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,798,765 | 0 | T | A | 13.5% | 167.5 / 13.5 | 80 | R262R (CGT→CGA) | proV | glycine betaine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (38/31); new base A (9/2); total (47/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCG > minE/1798698‑1798831 | aTGGTGAAGTGGTACAGGTCGGCACCCCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:1490224/1‑69 (MQ=255)aTGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:1108219/1‑69 (MQ=255)aTGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:2098361/1‑69 (MQ=255)aTGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:200454/1‑69 (MQ=255)aTGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTa > 1:1585516/1‑69 (MQ=255) gTGGTACAGGTTGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2208047/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGt > 1:338126/1‑60 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACcttctt > 1:1379168/1‑68 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2943286/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2308075/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2413363/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:1554601/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2581030/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:1440763/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2746942/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:1114292/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:2930697/1‑69 (MQ=255) gTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCttcttc > 1:3051825/1‑69 (MQ=255) ggTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCg > 1:476301/1‑69 (MQ=255) ggTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCg > 1:165504/1‑69 (MQ=255) ggTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCg > 1:2123881/1‑69 (MQ=255) ggTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCg > 1:431225/1‑69 (MQ=255) gTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGtt < 1:1772256/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1281284/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1427428/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1617855/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1619030/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1676144/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1762318/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1922830/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1983349/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:1116361/69‑1 (MQ=255) cGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGa < 1:2073258/69‑1 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCg > 1:3124045/1‑51 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCa > 1:3127500/1‑69 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCa > 1:2103837/1‑69 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCa > 1:2914025/1‑69 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCa > 1:3006026/1‑69 (MQ=255) ggATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCa > 1:2736172/1‑69 (MQ=255) aTGAAATTCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGtc < 1:2961118/56‑2 (MQ=39) tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCg < 1:1160785/53‑1 (MQ=255) tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCg < 1:2161050/53‑1 (MQ=255) tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCg < 1:2476254/53‑1 (MQ=255) tGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCg < 1:1363036/53‑1 (MQ=255) gAAATTCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGtc < 1:3314869/54‑2 (MQ=38) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:2265536/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:3056952/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:137500/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:1453018/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:1527549/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:3059046/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:2336749/69‑1 (MQ=255) gAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:2269534/69‑1 (MQ=255) aaaTTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:2565709/68‑1 (MQ=255) aaaTTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTa < 1:3179727/68‑1 (MQ=255) aTTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTc < 1:779985/69‑1 (MQ=255) aTTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTc < 1:596212/69‑1 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTTGCGTCGATATTAGCCAGGTGTTCa > 1:405852/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:2862477/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:1009403/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:249475/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:1078269/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:1391489/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:389718/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:3347082/1‑69 (MQ=255) ttCTTAATAATCCGGCGAATGATTATGTCCGAACCTTCTTCCGTGGCGTCGATATTAGCCAGGTGTTCa > 1:3350898/1‑69 (MQ=255) tctcAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAg > 1:2840694/1‑69 (MQ=255) tctcAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAg > 1:818237/1‑69 (MQ=255) ccGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGa < 1:1286228/68‑1 (MQ=255) ccGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGa < 1:1516646/68‑1 (MQ=255) ccGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGa < 1:2838222/68‑1 (MQ=255) gTCCGTACCTTCTTCCGTGTCGTTGATATTAGTCAGGTa < 1:534572/39‑1 (MQ=255) tCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGccc > 1:107628/1‑60 (MQ=255) tCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGaca > 1:1348116/1‑68 (MQ=255) tCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGaca > 1:801957/1‑68 (MQ=255) tCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGaca > 1:446964/1‑68 (MQ=255) tCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGac > 1:93251/1‑67 (MQ=255) tCCGTACCTTCTTCAGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGaca > 1:1249854/1‑68 (MQ=255) tCCGTAACTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCg > 1:441872/1‑47 (MQ=255) cGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGacac > 1:572458/1‑67 (MQ=255) cGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCg > 1:1031028/1‑69 (MQ=255) | ATGGTGAAGTGGTACAGGTCGGCACACCGGATGAAATTCTCAATAATCCGGCGAATGATTATGTCCGTACCTTCTTCCGTGGCGTTGATATTAGTCAGGTATTCAGTGCGAAAGATATTGCCCGCCGGACACCG > minE/1798698‑1798831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |