| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,801,863 | T→C | 74.0% | pseudogene (87/882 nt) | ygaY → | ECK2675:JW5428:b2681; predicted transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,801,863 | 0 | T | C | 74.0% | 50.9 / 14.4 | 46 | pseudogene (87/882 nt) | ygaY | ECK2675:JW5428:b2681; predicted transporter |
| Reads supporting (aligned to +/- strand): ref base T (5/7); new base C (11/23); total (16/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
AACCGGTTTATTCTCAGTCGTGGCACAAATTCTGGTTCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGACA > minE/1801797‑1801929 | aaCCGGTTTATTCTCAGTCGTGGCACAAATTCTGGTTCCGCTGGCAGCGACGCTGGCTTCACCGGATaa > 1:2942535/1‑69 (MQ=255)aaCCGGTTTATTCACAGTCGTGGCACAAATTCTGGTTCCGCTGGCAGCGACGCTGGCTTCACCGGATaa > 1:716373/1‑69 (MQ=255) ctcAGTCGTGGCACAAATTCTGGTTCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGt > 1:2128145/1‑69 (MQ=255) ctcAGTCGTGGCACAAATTCTGGTTCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGt > 1:3175326/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:2867646/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:242108/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:2488034/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:2084965/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:1185044/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:1996968/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:1944569/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:2772185/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:1666536/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:1663479/1‑69 (MQ=255) tcAGTCGTGGCACAAATTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTg > 1:3256070/1‑69 (MQ=255) ggCACAAATTCTGGTTCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCAc < 1:1238583/69‑1 (MQ=255) acaAATTCTGGTTCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACtat < 1:1426788/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGGGGCAAAGTGGTTGGCACCATTATg < 1:2539747/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:2411668/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:3220015/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:3244070/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:286221/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:1942151/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:370835/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:2691172/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:468152/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:1518807/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:2528653/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:2248677/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:936019/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGAACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:3366063/69‑1 (MQ=255) aTTCTGGTTCCACTGGCAGCGACGCTGGCCTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:1536295/69‑1 (MQ=255) ttCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:1532214/68‑1 (MQ=255) ttCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:325271/68‑1 (MQ=255) ttCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:325080/68‑1 (MQ=255) ttCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:2434563/68‑1 (MQ=255) ttCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:1636301/68‑1 (MQ=255) ttCTGGTTCCACTGGCAGCGACGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:1855796/68‑1 (MQ=255) tCTGGTTCCACTGGCAGCGTCGCTGGCTTCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:2069092/67‑1 (MQ=255) aGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTggg > 1:2751401/1‑69 (MQ=255) tCACCGGACAAACGCGGCAAAGTGGTTGGCACCATTATg < 1:550072/39‑1 (MQ=37) cGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGa < 1:3199014/69‑1 (MQ=255) cGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGa < 1:2948203/69‑1 (MQ=255) cGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGa < 1:2707538/69‑1 (MQ=255) cGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGa < 1:2466904/69‑1 (MQ=255) gATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGACa < 1:2651661/69‑1 (MQ=255) | AACCGGTTTATTCTCAGTCGTGGCACAAATTCTGGTTCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGACA > minE/1801797‑1801929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |