Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,831,037 C→T 44.4% intergenic (‑108/‑58) ygbI ← / → ygbJ predicted DNA‑binding transcriptional regulator/predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,831,0370CT44.4% 40.2 / 115.3 144intergenic (‑108/‑58)ygbI/ygbJpredicted DNA‑binding transcriptional regulator/predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain
Reads supporting (aligned to +/- strand):  ref base C (47/33);  new base T (51/13);  total (98/46)
Fisher's exact test for biased strand distribution p-value = 1.14e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.33e-01

Only 100 of 144 total aligned reads displayed.

TCACATAAAATAACACACAATGTTAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGAAAAC  >  minE/1830978‑1831102
                                                           |                                                                 
tCACATAAAATAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTta                                                          <  1:1022803/69‑1 (MQ=255)
tCACATAAAATAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTta                                                          <  1:355251/69‑1 (MQ=255)
       aaaTAACACACAATGTTAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTcac                                                   <  1:3257892/69‑1 (MQ=255)
         aTAACATGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:671087/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTcaca                                                  >  1:2578931/1‑68 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTc                                                     >  1:2716316/1‑65 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:1130163/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:2233145/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:3260102/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:2566042/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:1871477/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:3112321/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:1526880/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:2876765/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:1098141/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:2926780/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:2933065/1‑69 (MQ=255)
         aTAACACGCAATGTTAATTTTTGTGAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACaa                                                 >  1:786713/1‑69 (MQ=255)
         aTAACACACAATGTTAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACaa                                                 <  1:28907/69‑1 (MQ=255)
         aTAACACACAATGTTAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACaa                                                 <  1:633313/69‑1 (MQ=255)
                   aTGTTAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATcaaacaa                                       <  1:1086275/69‑1 (MQ=255)
                      ttAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACaaaa                                     >  1:510619/1‑68 (MQ=255)
                      ttAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAat                                    >  1:1719606/1‑69 (MQ=255)
                      ttAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAat                                    <  1:1950782/69‑1 (MQ=255)
                      ttAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAat                                    <  1:2484158/69‑1 (MQ=255)
                          tttATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATc                                 <  1:2658823/68‑1 (MQ=255)
                          tttATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATc                                 <  1:2731427/68‑1 (MQ=255)
                          tttATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATc                                 <  1:1413835/68‑1 (MQ=255)
                          tttATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATc                                 <  1:2051324/68‑1 (MQ=255)
                          tttATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATc                                 <  1:1190144/68‑1 (MQ=255)
                          tttATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATc                                 <  1:2127457/68‑1 (MQ=255)
                          tttATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATc                                 <  1:2408791/68‑1 (MQ=255)
                           ttttgtgAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCa                                <  1:3012459/65‑1 (MQ=255)
                           ttttgtgAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCa                                <  1:1087442/65‑1 (MQ=255)
                           ttttgtgAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCa                                <  1:2906717/65‑1 (MQ=255)
                           ttttgtgAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCa                                <  1:462841/65‑1 (MQ=255)
                           ttttgtgAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCa                                <  1:1500003/65‑1 (MQ=255)
                           ttttgtgAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCa                                <  1:2203001/65‑1 (MQ=255)
                           ttttgtgAATCAGCTCACCATATCGTTATCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCa                                <  1:1971586/65‑1 (MQ=255)
                                          cACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAg                  >  1:2157790/1‑67 (MQ=255)
                                          cACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAg                  >  1:2960712/1‑67 (MQ=255)
                                                aCCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          <  1:2254648/69‑1 (MQ=255)
                                                aCCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          <  1:2230997/69‑1 (MQ=255)
                                                aCCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          <  1:2373285/69‑1 (MQ=255)
                                                aCCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          <  1:1042726/69‑1 (MQ=255)
                                                aCCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          <  1:2185173/69‑1 (MQ=255)
                                                 ccGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          >  1:1413907/1‑68 (MQ=255)
                                                 ccGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          >  1:280161/1‑68 (MQ=255)
                                                 ccGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          >  1:1649791/1‑68 (MQ=255)
                                                 ccGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          >  1:2971143/1‑68 (MQ=255)
                                                 ccGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          >  1:2597391/1‑68 (MQ=255)
                                                 ccGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          >  1:3341260/1‑68 (MQ=255)
                                                 ccGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          >  1:2422156/1‑68 (MQ=255)
                                                 ccGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          >  1:341168/1‑68 (MQ=255)
                                                 cagTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAg          >  1:782069/3‑68 (MQ=255)
                                                     tATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaa     <  1:485577/69‑1 (MQ=255)
                                                     tATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaa     <  1:2696041/69‑1 (MQ=255)
                                                     tATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaa     <  1:585218/69‑1 (MQ=255)
                                                     tATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaa     <  1:3410014/69‑1 (MQ=255)
                                                     tATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaa     <  1:2810711/69‑1 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGa         >  1:2254534/1‑64 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATg       >  1:197595/1‑66 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:933086/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:958591/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:682511/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:3064547/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:531970/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:3228713/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:449762/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1581602/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:2203540/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1792964/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1765201/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1688439/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:2377483/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:2388587/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:2492419/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1476261/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1311185/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:128230/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1231684/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:279164/1‑69 (MQ=255)
                                                      aTCTTTCCGCGCTTATATTCACAACATCAAACAAAATATAACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1200427/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:380443/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:848608/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:903843/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1779261/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:2282404/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:2837784/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:2340132/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:3431058/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:3316121/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:3284355/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:1005983/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:324362/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:2602310/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaaa    >  1:3069736/1‑69 (MQ=255)
                                                      aTCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaa     >  1:2521247/1‑68 (MQ=255)
                                                        cTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGaa     <  1:2075551/66‑1 (MQ=255)
                                                         ttCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGAAAAc  >  1:3165219/1‑68 (MQ=255)
                                                           |                                                                 
TCACATAAAATAACACACAATGTTAATTTATGTGAATCAGATCACCATACCGTTATCTTCCAGCGCTTATATTCACAATATCAAACAAAATATCACTTAAATTAACAAGGAGAGCAGATGAAAAC  >  minE/1830978‑1831102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: