| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,889,608 | G→A | 57.3% | G207G (GGC→GGT) | gudX ← | predicted glucarate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,889,608 | 0 | G | A | 57.3% | 18.5 / 56.6 | 75 | G207G (GGC→GGT) | gudX | predicted glucarate dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (16/16); new base A (16/27); total (32/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
CGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGCACA > minE/1889540‑1889668 | cgcgCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACAcgccg > 1:1945194/1‑69 (MQ=255)cgcgCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACAcgccg > 1:2027901/1‑69 (MQ=255) cGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAg < 1:3365871/69‑1 (MQ=255) cGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAg < 1:1516/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:1014941/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:988925/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:1851409/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:1690191/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:546929/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:1265817/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:3426864/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:2962003/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:2746502/69‑1 (MQ=255) aGCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:2680508/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:2274283/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:1912205/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:2626143/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:2476771/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:455526/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:559868/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:75562/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:867925/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:992880/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:1002739/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:1346495/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:1496985/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:1590900/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:167651/69‑1 (MQ=255) gCGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGa < 1:2880919/68‑1 (MQ=255) cGTTTCTTCAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:3383804/68‑1 (MQ=255) gTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAAt < 1:3173458/69‑1 (MQ=255) gTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAAt < 1:1986301/69‑1 (MQ=255) gTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAAt < 1:2693399/69‑1 (MQ=255) gTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAAt < 1:96105/69‑1 (MQ=255) gTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAAt < 1:2547050/69‑1 (MQ=255) gTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAAt < 1:2254041/69‑1 (MQ=255) tcttcAATGTACGGACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCACCCTTAAGTTTGaa < 1:216596/64‑1 (MQ=255) tCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCt > 1:2394368/1‑69 (MQ=255) tCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCt > 1:2281258/1‑69 (MQ=255) tCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCt > 1:1586982/1‑69 (MQ=255) cGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCa < 1:457755/69‑1 (MQ=255) cGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCa < 1:706768/69‑1 (MQ=255) cGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCa < 1:483431/69‑1 (MQ=255) cGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCa < 1:2774653/69‑1 (MQ=255) cGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCa < 1:1162617/69‑1 (MQ=255) cGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCa < 1:914502/69‑1 (MQ=255) cGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCa < 1:3164193/69‑1 (MQ=255) cGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCa < 1:3172187/69‑1 (MQ=255) agctAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:1334607/4‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:1186298/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:698009/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:1098641/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:3433212/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:3213919/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:1077095/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:922914/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:3261186/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:3231460/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:185456/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:321171/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:2930304/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:2054691/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:1675898/1‑63 (MQ=255) aGGTAACACGCCACCCTTAAGTTTGAAATCTTTAAAGCCATAGCGATCCTGTGAGGCTTCCGc > 1:2466787/1‑63 (MQ=255) tAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcac > 1:39458/1‑69 (MQ=255) tAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcac > 1:1045337/1‑69 (MQ=255) tAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcac > 1:2026821/1‑69 (MQ=255) tAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcac > 1:2030698/1‑69 (MQ=255) tAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcac > 1:1666769/1‑69 (MQ=255) tAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcac > 1:1002420/1‑69 (MQ=255) tAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcac > 1:470848/1‑69 (MQ=255) aaCACGCCGCCCTTAAGTTTGAGATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcaca > 1:698855/1‑69 (MQ=255) aaCACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcaca > 1:813536/1‑69 (MQ=255) aaCACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcaca > 1:631311/1‑69 (MQ=255) aaCACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcaca > 1:537686/1‑69 (MQ=255) aaCACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcaca > 1:126029/1‑69 (MQ=255) aaCACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGcaca > 1:1827413/1‑69 (MQ=255) | CGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCCGCCAGACGCACA > minE/1889540‑1889668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |